View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_25 (Length: 326)
Name: NF8241_high_25
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 40207688 - 40207988
Alignment:
| Q |
18 |
ttattttgtttgcatactcgacccaaattctaatatgtttcttgaaaaacacaggaactgtttggactgcaagtgcacatgtaataacagctgtggtagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207688 |
ttattttgtttgcatactcgacccaaattctaatatgtttcttgaaaaacacaggaactgtttggactgcaagtgcacatgtaataacagctgtggtagg |
40207787 |
T |
|
| Q |
118 |
gtctggagttctgtctctagcttgggctattgctcaactcggatggattgctggtcctattgttatgattctctttgcttgggttacttactacactgcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40207788 |
gtctggagttctgtctctagcttgggctattgctcaactcggatggattgctggtcctattgtcatgattctctttgcttgggttacttactacactgcc |
40207887 |
T |
|
| Q |
218 |
attcttctttgtgaatgttatcgtaatgatgatcctatcaatggcaagagaaactacacttacatggatgttgttcattccaatcttggtaaattcttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207888 |
attcttctttgtgaatgttatcgtaatgatgatcctatcaatggcaagagaaactacacttacatggatgttgttcattccaatcttggtaaattcttct |
40207987 |
T |
|
| Q |
318 |
c |
318 |
Q |
| |
|
| |
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| T |
40207988 |
c |
40207988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 33 - 313
Target Start/End: Original strand, 40199384 - 40199664
Alignment:
| Q |
33 |
actcgacccaaattctaatatgtttcttgaaaaacacaggaactgtttggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtc |
132 |
Q |
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|||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40199384 |
actcgacccaaattttaataggttttatgaaaaacacaggaactgcttggactgcaagtgcacatgtaataacagctgtggtagggtctggagtgctgtc |
40199483 |
T |
|
| Q |
133 |
tctagcttgggctattgctcaactcggatggattgctggtcctattgttatgattctctttgcttgggttacttactacactgccattcttctttgtgaa |
232 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || ||| |
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| T |
40199484 |
tctatcttgggctattgctcaacttggatggattgctggtcctattgtcatgattctctttgcttgggttacttactacacttccattcttctatgcgaa |
40199583 |
T |
|
| Q |
233 |
tgttatcgtaatgatgatcctatcaatggcaagagaaactacacttacatggatgttgttcattccaatcttggtaaattc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40199584 |
tgttatcgtaatgatgatcctatcaatggcaagagaaactacacttacatggatgctgttcattccaatcttggtaaattc |
40199664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 41 - 313
Target Start/End: Original strand, 40203555 - 40203827
Alignment:
| Q |
41 |
caaattctaatatgtttcttgaaaaacacaggaactgtttggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagctt |
140 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
40203555 |
caaattctaatatgtttcttgaaaaacacaggaactgcttggactgcaagtgcacatgtaataacagctgtgatagggtctggagtgctgtctctagctt |
40203654 |
T |
|
| Q |
141 |
gggctattgctcaactcggatggattgctggtcctattgttatgattctctttgcttgggttacttactacactgccattcttctttgtgaatgttatcg |
240 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |||||||||||||| |
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| T |
40203655 |
gggctattgctcaacttggatggattgctggtcctattgttatgattctctttgcttgggttacttattatacctccattcttctctgtgaatgttatcg |
40203754 |
T |
|
| Q |
241 |
taatgatgatcctatcaatggcaagagaaactacacttacatggatgttgttcattccaatcttggtaaattc |
313 |
Q |
| |
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|| || ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40203755 |
tactggtgatcctatcagtggcaagagaaactatacttacatggatgttgttcattccaatcttggtaaattc |
40203827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 281
Target Start/End: Complemental strand, 10299851 - 10299650
Alignment:
| Q |
80 |
tggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctggtcctattg |
179 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||| | || |||||||| |||||| | || ||||||||||| ||||| |||||||||||||| || |
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| T |
10299851 |
tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctggaccatcaa |
10299752 |
T |
|
| Q |
180 |
ttatgattctctttgcttgggttacttactacactgccattcttctttgtgaatgttatcgtaatgatgatcctatcaatggcaagagaaactacactta |
279 |
Q |
| |
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| ||| |||| || | | |||||||||||||| ||| |||||||| || |||||||||| | ||||| |||||||||| |||||||||||||| |
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| T |
10299751 |
tgatgcttcttttctcgtttgttacttactacacctccactcttctttctgtttgttatcgtaccggtgatcaactcaatggcaaaagaaactacactta |
10299652 |
T |
|
| Q |
280 |
ca |
281 |
Q |
| |
|
|| |
|
|
| T |
10299651 |
ca |
10299650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 39429280 - 39429174
Alignment:
| Q |
69 |
caggaactgtttggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgc |
168 |
Q |
| |
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|||||| ||||||||| ||||| |||| | ||||||||||| |||| || || || ||||| |||||||||| |||||||| || || |||||||| |
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| T |
39429280 |
caggaagtgtttggaccgcaagctcacacattataacagctgttataggatcaggggtgttgtctttagcttgggccattgctcagctaggttggattgc |
39429181 |
T |
|
| Q |
169 |
tggtcct |
175 |
Q |
| |
|
||||||| |
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|
| T |
39429180 |
tggtcct |
39429174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 6249330 - 6249434
Alignment:
| Q |
71 |
ggaactgtttggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctg |
170 |
Q |
| |
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|||| ||||| |||||||| | |||| |||||||||||||| |||| || || || ||||| |||||||||| || ||||| || || ||| |||||| |
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| T |
6249330 |
ggaagtgttttgactgcaatttcacacataataacagctgtgataggatcaggggtgttgtctttagcttgggccatagctcagctaggttgggttgctg |
6249429 |
T |
|
| Q |
171 |
gtcct |
175 |
Q |
| |
|
||||| |
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|
| T |
6249430 |
gtcct |
6249434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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