View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_27 (Length: 316)
Name: NF8241_high_27
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 25362459 - 25362648
Alignment:
| Q |
18 |
atccattccacacactgtgcttctaaatatcatctttgataactatcatatcaacattacatatgaggttgtatatataaatatgtataaaatataacgc |
117 |
Q |
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| T |
25362459 |
atccattccacacaccgtgcttctgaatatcatctttgataactatcatatcaacattacctatgaggttgtatatataaatatgtataaaatataacgt |
25362558 |
T |
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| Q |
118 |
taataacttcaatacttgtaagtctcgacaagcgtgagacacctacgagaagttaaacattacgatcgtatgaggtgtccctacttgctc |
207 |
Q |
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| T |
25362559 |
taataacttcaatacttgtaagtctcgacaagcgtgagacacctacgagaagttaaacattacgatcgtatgaagtgtccctacttgctc |
25362648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 25353107 - 25353162
Alignment:
| Q |
18 |
atccattccacacactgtgcttctaaatatcatctttgataactatcatatcaacat |
74 |
Q |
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| T |
25353107 |
atccattccacacactgtgcttctgaatatcatc-ctggtaactgtcatatcaacat |
25353162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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