View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_29 (Length: 312)
Name: NF8241_high_29
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 10483763 - 10483994
Alignment:
| Q |
16 |
caacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgatgattcctctaaaattcatgattgagatgacactattttcatgttt |
115 |
Q |
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| T |
10483763 |
caacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgatgattcctctaaaattcatgattgagatgacactattttcatgttt |
10483862 |
T |
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| Q |
116 |
ccattataacgatgttgcttcttttaaattttctatgatccatttacttgtccattcatttggacaagcatgagttttagaagcataaatatatgaaata |
215 |
Q |
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| T |
10483863 |
ccattataacgatgttgcttcttttaaattttctatgatccatttacttgtccattcatttggacaagtatgagttttagaagcataa--atatgaaata |
10483960 |
T |
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| Q |
216 |
aaagctttagatattgatgttcattacttgactt |
249 |
Q |
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| T |
10483961 |
aaagctttagatattgatgttcattacttgactt |
10483994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 4951909 - 4951832
Alignment:
| Q |
16 |
caacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgatgattcctctaaaattcatgattgaga |
96 |
Q |
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| T |
4951909 |
caacatggaagatttatgtgaaattccatgcaacacatctcaacacaaaga---tgattcctctaaaattcatgattgaga |
4951832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 4951736 - 4951645
Alignment:
| Q |
158 |
tttacttgtccat--tcatttggacaagcatgagttttagaagcataaatatatgaaataaaagct----ttagatattgatgttcattacttgac |
247 |
Q |
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| T |
4951736 |
tttacttgtccatattcatt-ggacaagtatgagttttagaagcatatatat---aaataaaagctttaattagatgttgatgttcattacttgac |
4951645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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