View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8241_high_32 (Length: 303)
Name: NF8241_high_32
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_32 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 34396998 - 34396707
Alignment:
| Q |
12 |
gaagagaagtgagcttaatgagaagatttgtatcatgatggagaagctcggcaactacatcatagagaccatttgcagctgctaaatcaataggtgttgc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34396998 |
gaagagaagtgagcttaatgagaagatttgtatcatgatggagaagctcagcaactaaatcatagagaccatttgcagctgctaaatcaataggtgttgc |
34396899 |
T |
|
| Q |
112 |
ataccaccattggtctcctgtgctctcccaacgtagaggaaagtaagaaggtgccatattcaaatcactgtgttgaagaaacaaagtaaagtggcttttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34396898 |
ataccaccattggtctcctgtgctctcccaacgtagaggaaagtaagaaggtgccatattcaaatcactgtgttgaagaaacaaagtaaagtggcttttt |
34396799 |
T |
|
| Q |
212 |
agactctttcataaaaagtataaagtgaaaaatcattcaattattaggagaatatattcaatattctcttggatatgaaaaagtgagtgtta |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34396798 |
agactctttcataaaaagtataaagtgaaaaatcattcaattattaggagaatatattcaatattctcttggatatgaaaaagtgagtgtta |
34396707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 38831886 - 38831965
Alignment:
| Q |
80 |
ccatttgcagctgctaaatcaataggtgttgcataccaccattggtctcctgtgctctcccaacgtagaggaaagtaaga |
159 |
Q |
| |
|
|||||||| ||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||||| |||||||| ||||| |
|
|
| T |
38831886 |
ccatttgctgctgctaaatcgattggtgatgcgtaccaccattgttgtcctgtgctttcccaacggagaggaaaataaga |
38831965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 7997452 - 7997501
Alignment:
| Q |
104 |
ggtgttgcataccaccattggtctcctgtgctctcccaacgtagaggaaa |
153 |
Q |
| |
|
|||| |||||||||||||||||| || || ||||||||||| |||||||| |
|
|
| T |
7997452 |
ggtgatgcataccaccattggtcaccggtactctcccaacgaagaggaaa |
7997501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University