View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_33 (Length: 298)
Name: NF8241_high_33
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 34095356 - 34095636
Alignment:
| Q |
1 |
accaactgggccatttcagtttcctcaacaacaaatgatgatgaatgaaaacaccaccaacaacaataataacactgttttggttggttctggttatgtt |
100 |
Q |
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| T |
34095356 |
accaactgggccatttcagtttcctcaacaacaaatgatgatgaatgaaaacaccaccaacaacaataataacactgttttggttggttctggttatgtt |
34095455 |
T |
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| Q |
101 |
ccttttgttggttctaacgttggtgctggatggattgtgcctaacaatcacaatcagaatcagaataacattaacaacagggttgttgttggtggcggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
34095456 |
ccttttgttggttctaacgttggtgctggatggattgtgcctaacaatcagaatcagaatcagaataacattaaaaacagggttgttgttggtggtggta |
34095555 |
T |
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| Q |
201 |
actatggatctggttcactactttgtagtagtagaaacccttttgagccttctaaagagctctcttcaatgccaaatcttc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095556 |
actatggatctggttcactactttgtagtagtagaaacccttttgagccttctaaagagctctcttcaatgccaaatcttc |
34095636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 12294592 - 12294560
Alignment:
| Q |
12 |
catttcagtttcctcaacaacaaatgatgatga |
44 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
12294592 |
catttcagtttcctcaacaacaagtgatgatga |
12294560 |
T |
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