View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_36 (Length: 282)
Name: NF8241_high_36
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 596009 - 595752
Alignment:
| Q |
19 |
ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatatcgatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
596009 |
ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatatcgatt |
595910 |
T |
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| Q |
119 |
nnnnnnnncctccatttgtccgcttgaaatgcctccatttagctttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595909 |
aaaaaaaacctccatttgtccgcttgaaatgcctccatttagctttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagattt |
595810 |
T |
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| Q |
219 |
gtttaccnnnnnnntgtaaagagcgaaaaggaagatttgattgatattgaacaccaaa |
276 |
Q |
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| T |
595809 |
gtttaccaaaaaaatgtaaagagcgaaaaggaagatttgattgatattgaacaccaaa |
595752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 17373604 - 17373398
Alignment:
| Q |
19 |
ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatatcgatt |
118 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17373604 |
ttttcaacgagtttatttaaattattcatcatataataactaccatgaatatgaattttacaatcatttgttgctataagcatccatttgaatatcgatt |
17373505 |
T |
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| Q |
119 |
nnnnnnnncctccatttgtccgcttgaaatgcctccatttagctttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagattt |
218 |
Q |
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| T |
17373504 |
aaaaaaaacctccatttgtctacttgaaatgcttccatttagctttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagattt |
17373405 |
T |
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| Q |
219 |
gtttacc |
225 |
Q |
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||||||| |
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| T |
17373404 |
gtttacc |
17373398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 33005960 - 33006051
Alignment:
| Q |
19 |
ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatat |
113 |
Q |
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| T |
33005960 |
ttttcaacaagtttattttaattattcatcatataataactaccatga---tgaattttacaatcatttgttgttataagcatccatttgaatat |
33006051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 7632832 - 7632928
Alignment:
| Q |
19 |
ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatatcgatt |
118 |
Q |
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|||||||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| |
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| T |
7632832 |
ttttcaacaagtttatttcaattattcatcataaaataaccaccatgaatatgaattttacaatcat---ttgtcataagcaaccatttgaaaatcgatt |
7632928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 33006147 - 33006205
Alignment:
| Q |
163 |
ttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagatttgttt |
222 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33006147 |
ttaatatcataaagaacgagatctttttctttgactaatcataaa-aatgagatttgttt |
33006205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 7633021 - 7633083
Alignment:
| Q |
163 |
ttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagatttgtttacc |
225 |
Q |
| |
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||||||||||||||||| |||| |||| ||| ||||||||||||| ||| |||||||||||| |
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| T |
7633021 |
ttaatatcataaagaacgagattttttatttttactaatcataaagtatgggatttgtttacc |
7633083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 15290482 - 15290410
Alignment:
| Q |
19 |
ttttcaacaagtttatttaaattatttatcatataataa--ctaccatgaatatgaattttacaatcatttgt |
89 |
Q |
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|||||||||||||||||| ||||||| |||||| || || |||||||||||||||||||||||||||||||| |
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| T |
15290482 |
ttttcaacaagtttatttcaattattcatcataaaaaaaaactaccatgaatatgaattttacaatcatttgt |
15290410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 26587991 - 26588056
Alignment:
| Q |
20 |
tttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcat |
85 |
Q |
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||||||||||||||| | ||||||| || | ||||||||||| || ||||||||||||||||||| |
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| T |
26587991 |
tttcaacaagtttatgtcaattattcatgaaataataactactttgtatatgaattttacaatcat |
26588056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 15290303 - 15290245
Alignment:
| Q |
163 |
ttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagatttgtt |
221 |
Q |
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||||||||||||||||| || ||||| ||| |||||| ||||||||||||||||||| |
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| T |
15290303 |
ttaatatcataaagaacgagtatttttttttttactaatgataaagaatgagatttgtt |
15290245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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