View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_44 (Length: 260)
Name: NF8241_high_44
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 45558358 - 45558141
Alignment:
| Q |
19 |
gagtgagcttcgtgaatcaattaatcaaattaacgaagaggaagaggaagagga------cgagcacgaggatgactacgttaacgactacgacgaacga |
112 |
Q |
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| T |
45558358 |
gagtgagcttcgtgaatctattaatcaaattaacgaagaggaagaggaagaggaagaggacgagcacgaggatgattacgttaacgactacgacgaacga |
45558259 |
T |
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| Q |
113 |
accaaacgatttgaacatcaatctttaattgatgattttttggaattgtttcggcactctcttaaaccgaaccttaagactatgtttacagattatttgt |
212 |
Q |
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| T |
45558258 |
atcaaacgatttgaacatcaatctttaattgatgattttttggaattgtttcggcactctcttaaaccgaaccttaagactatgtttacagattatttgt |
45558159 |
T |
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| Q |
213 |
ataacaatagtaaagttg |
230 |
Q |
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| T |
45558158 |
ataacaatagtaaagttg |
45558141 |
T |
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