View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_5 (Length: 507)
Name: NF8241_high_5
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Complemental strand, 36416120 - 36415637
Alignment:
| Q |
17 |
atgaacctggtattagagacatgaaacctacattggttcttaatagaatcacttattggcaaaggttgttggatagagctattggtacgagaccgactgg |
116 |
Q |
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| T |
36416120 |
atgaacctggtattagagacatgaaacctacattggttcttaatagaatcacttattggcaaaggttgttggatagagctattggtacgagaccgactgg |
36416021 |
T |
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| Q |
117 |
agcggctaagaataatcgtttggttcagatttctctttatgctgttgtgcaagaaagttttgatctttacaaagatatctctgatgggcttggggttgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36416020 |
agcggctaagaataatcgtttggttcagatttctctttatgctgttgtgcaagaaagttttgatctttacaaagatatctctgatgggcttggggttgtt |
36415921 |
T |
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| Q |
217 |
ttggataatttcttcaatttaccactttcagcttgtgttactgcattcaatgcatgtgttaaatcatataaacaatttgatgagttatctgcattttatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36415920 |
ttggataatttcttcaatttaccactttcagcttgtgttactgcattcaatgcatgtgttaaatcatataaacaatttgatgagttatctgcattttatt |
36415821 |
T |
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| Q |
317 |
ctttttgtttaaatattggaattggaaggtcctatgagtatccaagtgtgcaaaaagtttccgaagagcttatggagacattacaagctttcttgaagga |
416 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36415820 |
cattttgtttaaatattggaattggaaggtcctatgagtatccaagtgtgcaaaaagtttccgaagagcttatggagacattacaagctttcttgaagga |
36415721 |
T |
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| Q |
417 |
tcaagcttcattccataatactgcttcaaaacattttattctttctgcacnnnnnnnntctaatgcaggtttaagttcatctca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36415720 |
tcaagcttcattccataatactgcttcaaaacattttattctttctgcacaaaaaaaatctaatgcaggtttaagttcatctca |
36415637 |
T |
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