View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_54 (Length: 241)
Name: NF8241_high_54
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 7443801 - 7443926
Alignment:
| Q |
1 |
ccttttgtttagtaaggacagacaaattaaaagtggtcaaactttatttctttcttgtccaggatattgaactgaatattcctcaatagattgactagat |
100 |
Q |
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| T |
7443801 |
ccttttgtttagtaaggacagacaaattaaaagtggtcaaactttatttctttcttgtccaggatattgaactgaatattcctcaatagattgactagat |
7443900 |
T |
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| Q |
101 |
taatgccacgtttgaactatttttat |
126 |
Q |
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| T |
7443901 |
taatgccacgtttgatctatttttat |
7443926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 7458104 - 7458214
Alignment:
| Q |
14 |
aaggacagacaaattaaaagtggtcaaactttatttctttcttgtccaggatattgaactgaatattcctcaatagattgactagattaatgccacgttt |
113 |
Q |
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| T |
7458104 |
aaggacagacaaattaaaagtggtaacactttatttctttcatgtccaagat--tgaactggatattcctcaatagattgactagattaatgccacgttt |
7458201 |
T |
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| Q |
114 |
gaactatttttat |
126 |
Q |
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| T |
7458202 |
gatctatttttat |
7458214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 7443970 - 7444025
Alignment:
| Q |
170 |
tgttggatgacacagatttccagttagaggacggtccatgttacttggcgctgctg |
225 |
Q |
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| T |
7443970 |
tgttggatgacacagatttgcagttagaggacggtccatgttacttggtgctgctg |
7444025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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