View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_56 (Length: 238)
Name: NF8241_high_56
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_56 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31104474 - 31104249
Alignment:
| Q |
1 |
tcatgcttattttgaagtattaattggtgcaatgaaaagaagaaattgcttgagaatgttgtgcaagaaaaatacaaaagatgttattattatatagtac |
100 |
Q |
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| T |
31104474 |
tcatgcttattttgaagtattaattggtgcaatgaaaagaagaaattgcttgagaatgttgtgcaagaaaaatacaaaagatgttattattatatagtac |
31104375 |
T |
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| Q |
101 |
agtagattatttcgttgagttagttcaatagattatttcatgtgaagttgctttcccaccaaaggtggttttcctgttccaagcatcttacaagagaaga |
200 |
Q |
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| T |
31104374 |
agtagattatttcgttgagttagttcaatagattatttcatgtgaagttgctttcccaccaaaggtggttttcctgttccaagcatcttacaagagaaga |
31104275 |
T |
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| Q |
201 |
aacaagaaaaagactaggttattatt |
226 |
Q |
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| T |
31104274 |
aacaagaaaaagactaggttattatt |
31104249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 31059633 - 31059578
Alignment:
| Q |
138 |
tcatgtgaagttgctttcccaccaaaggtggttttcctgttccaagcatcttacaa |
193 |
Q |
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| T |
31059633 |
tcatgtgaagttgctttcccaccaaaggtgattttcctattgcaagcatcttacaa |
31059578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 31141633 - 31141585
Alignment:
| Q |
138 |
tcatgtgaagttgctttcccaccaaaggtggttttcctgttccaagcat |
186 |
Q |
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| T |
31141633 |
tcatgtgaagttgcattcccaccaaaggtgattttcctattgcaagcat |
31141585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 31160451 - 31160403
Alignment:
| Q |
138 |
tcatgtgaagttgctttcccaccaaaggtggttttcctgttccaagcat |
186 |
Q |
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| T |
31160451 |
tcatgtgaatttgcattcccaccaaaggtgattttcctattgcaagcat |
31160403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 31242554 - 31242506
Alignment:
| Q |
138 |
tcatgtgaagttgctttcccaccaaaggtggttttcctgttccaagcat |
186 |
Q |
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||||||||| |||| ||||||||||||||| ||||||| || ||||||| |
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| T |
31242554 |
tcatgtgaatttgcattcccaccaaaggtgattttcctattgcaagcat |
31242506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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