View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_7 (Length: 473)
Name: NF8241_high_7
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Original strand, 42271690 - 42272150
Alignment:
| Q |
17 |
atatacagggaaggtagaaaaggaaaatgtgaaaactaccaagagtcaccgactaatctcgtcaaacatcccaatatcaaaccacatccaaagtctcact |
116 |
Q |
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| T |
42271690 |
atatacacggaaggtagaaaaggaaaatgtgaaaactaccaagagtcaccgactaatctcgtcaaacatcccaatatcaaaccacatccaaagtctcact |
42271789 |
T |
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| Q |
117 |
ttctcctaaaatgaagcaaaaaggccactcaagtgtctcatctgcatttaatggcattgtgcaataactcattcacgccagacaaaacgacaactcaaaa |
216 |
Q |
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| T |
42271790 |
ttctcctaaaatgaagcaaaaaggccactcaagtgtctcatctgcatttaatggcattgtgcaataactcattcacgccagacaaaacgacaactcaaaa |
42271889 |
T |
|
| Q |
217 |
ggcgcaaattgataacaatgccattaaatgcagatgaaagtgagactttgcaataacaatgccactcaagtgtctcactccccaaagatcttgcaacaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42271890 |
ggcgcaaattgataacaatgccattaaatgcagatgaaagtgagactttgcaataacaatgccactcaagtgtctcactccccaaagatcttgcaacaga |
42271989 |
T |
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| Q |
317 |
gtcaaattaacat----------------------gtgaaccccatttatgatgcacctgtcaccctttatccgataagaatcttagccgaacaatggtt |
394 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42271990 |
gtcaaattaacatgtgaacagagtcaaattaacacgtgaaccccatttatgatgcacctgtcaccttttatccgataagaatcttagccgaacaatggtt |
42272089 |
T |
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| Q |
395 |
tctcatacatgtcggtacaactacgacatcacatctttcatgttgaacgtgtcaccaccaa |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42272090 |
tctcatacatgtcggtacaactacgacatcacatctttcatgttgaacatgtcaccaccaa |
42272150 |
T |
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