View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8241_low_1 (Length: 714)

Name: NF8241_low_1
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8241_low_1
NF8241_low_1
[»] chr3 (8 HSPs)
chr3 (67-301)||(47565676-47565910)
chr3 (445-700)||(47565908-47566179)
chr3 (67-139)||(53682982-53683054)
chr3 (68-139)||(34974803-34974874)
chr3 (68-140)||(31125752-31125824)
chr3 (67-139)||(38930470-38930542)
chr3 (68-139)||(53107639-53107710)
chr3 (93-130)||(32170503-32170540)
[»] chr2 (7 HSPs)
chr2 (68-153)||(6796484-6796568)
chr2 (67-151)||(7181553-7181636)
chr2 (67-139)||(13326995-13327067)
chr2 (68-140)||(35926125-35926197)
chr2 (68-139)||(6801054-6801125)
chr2 (68-139)||(39990580-39990651)
chr2 (68-140)||(35920134-35920206)
[»] chr1 (21 HSPs)
chr1 (68-144)||(5126499-5126575)
chr1 (68-142)||(48033100-48033174)
chr1 (67-141)||(48034709-48034783)
chr1 (68-141)||(48035756-48035829)
chr1 (68-141)||(48055941-48056014)
chr1 (68-140)||(48041323-48041395)
chr1 (68-140)||(48050608-48050680)
chr1 (68-141)||(29812825-29812898)
chr1 (68-141)||(48040171-48040244)
chr1 (68-141)||(48042833-48042906)
chr1 (68-140)||(48049406-48049478)
chr1 (68-135)||(48036725-48036792)
chr1 (68-141)||(48053125-48053198)
chr1 (67-139)||(48042225-48042297)
chr1 (68-139)||(39972786-39972857)
chr1 (68-146)||(22908317-22908395)
chr1 (67-136)||(48050016-48050085)
chr1 (68-141)||(48054677-48054750)
chr1 (81-141)||(29813662-29813722)
chr1 (68-141)||(48048640-48048714)
chr1 (70-129)||(48054322-48054381)
[»] chr4 (3 HSPs)
chr4 (67-141)||(49152534-49152608)
chr4 (68-139)||(38393563-38393634)
chr4 (78-134)||(26929299-26929355)
[»] chr6 (7 HSPs)
chr6 (68-139)||(992442-992513)
chr6 (68-145)||(10754597-10754674)
chr6 (68-145)||(10750280-10750357)
chr6 (85-140)||(32678635-32678690)
chr6 (67-139)||(18613088-18613160)
chr6 (68-140)||(10748684-10748756)
chr6 (487-550)||(12264313-12264377)
[»] chr7 (4 HSPs)
chr7 (67-139)||(23780469-23780541)
chr7 (68-139)||(43920607-43920678)
chr7 (67-139)||(40706106-40706178)
chr7 (78-134)||(46064798-46064854)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 67 - 301
Target Start/End: Original strand, 47565676 - 47565910
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttgtgatatgagtgttccgaaatt 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |    
T  47565676 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttgtgatgtgattgttccgaaaat 47565775  T
Q  167 atatataatacaaactttataaacttaaaactcgaagtttgaactatgacaaattttattaaacacaagctgtaataactggagtgctgctgcgatcagt 266  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  47565776 atatataatacaaactttataaacttaaaactggaagtttgaaccatgacaaatttaattaaacacgagctgtaataaatggagtgctgctgcgatcagt 47565875  T
Q  267 gaattattgtcgataattcagggtacgtggttttc 301  Q
    |||||||||||||||||||||||||||||||||||    
T  47565876 gaattattgtcgataattcagggtacgtggttttc 47565910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 445 - 700
Target Start/End: Original strand, 47565908 - 47566179
Alignment:
Q  445 ttcgcaaagttctagctcatatgtgaatgctgaaattaaatgtgtttgcttggaggcttattcaaaatagattgcctacaaggataatttacatcgacgt 544  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47565908 ttcgcaaagttctagctcatatgtcaatgctgaaattaaatgtgtttgcttggaggcttattcaaaatagattgcctacaaggataatttacatcgacgt 47566007  T
Q  545 ggtattgttactattgatgctcagttgtgtggccagatgcggttcctaggagaacacttgttttttgattgttagnnnnnnngttctctttggcagcg-- 642  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||      
T  47566008 gatattgttactattgatgctcagctgtgtggccagatgcggttcctaggagaacacttgtttttggattgttag-ttttttgttctctttggcagcgtg 47566106  T
Q  643 ---------------tagctttgacttctcaacagggtattatggatcagttatttgactggaacatctaaac 700  Q
                   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47566107 catccacggtcggtttagctttgacttctcaagagggtattatggatcagttatttgactggaacatctaaac 47566179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 53683054 - 53682982
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53683054 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 53682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 34974874 - 34974803
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974874 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 34974803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 31125824 - 31125752
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 140  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31125824 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 31125752  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 38930470 - 38930542
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    |||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38930470 tggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38930542  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 53107710 - 53107639
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53107710 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 53107639  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 32170540 - 32170503
Alignment:
Q  93 gacctctcgcacccaaagcgagaatcataccactagac 130  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  32170540 gacctctcgcaccccaagctagaatcataccactagac 32170503  T

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Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 6796568 - 6796484
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttgtgatatga 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6796568 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct-tttgtgatatga 6796484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 7181636 - 7181553
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttgtgatat 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7181636 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct-tttgtgatat 7181553  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 13326995 - 13327067
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13326995 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 13327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 35926125 - 35926197
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 140  Q
    ||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35926125 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 35926197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 6801054 - 6801125
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6801054 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 6801125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 39990651 - 39990580
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39990651 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39990580  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 35920134 - 35920206
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 140  Q
    ||||||||| |||||| |||||  ||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  35920134 ggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccct 35920206  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 5126575 - 5126499
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgttt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126575 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgttt 5126499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 48033174 - 48033100
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgt 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033174 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgt 48033100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 48034783 - 48034709
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48034783 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48034709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 48035829 - 48035756
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48035829 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48035756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 48056014 - 48055941
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48056014 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48055941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 48041395 - 48041323
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48041395 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48041323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 48050680 - 48050608
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48050680 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48050608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 29812825 - 29812898
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812825 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 29812898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 48040244 - 48040171
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48040244 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48040171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 48042906 - 48042833
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48042906 ggggcattcagagaatcgaactccgggcctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48042833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 48049478 - 48049406
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 140  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48049478 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48049406  T

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Target: chr1; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 48036792 - 48036725
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaat 135  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48036792 ggggcattcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaat 48036725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 48053198 - 48053125
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    ||||||||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48053198 ggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatgccctg 48053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 48042297 - 48042225
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    |||||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48042297 tggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 48042225  T

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Target: chr1; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 39972786 - 39972857
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39972786 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39972857  T

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Target: chr1; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 22908395 - 22908317
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttgt 146  Q
    ||||||||| |||||| ||||||  |||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  22908395 ggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgccctttttgt 22908317  T

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Target: chr1; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 48050085 - 48050016
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 136  Q
    |||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||    
T  48050085 tggggcattccgagaatcgaactcggaacctctcacacccaaagcgagaatcataccactagaccaaatg 48050016  T

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Target: chr1; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 48054750 - 48054677
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    ||||||||| |||||| |||||| | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  48054750 ggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatgccctg 48054677  T

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Target: chr1; HSP #19
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 29813662 - 29813722
Alignment:
Q  81 aatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29813662 aatcgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctg 29813722  T

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Target: chr1; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 48048714 - 48048640
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccacta-gaccaaatgccctg 141  Q
    ||||||||| ||||||| ||||  |||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  48048714 ggggcattccgagaatcaaacttgggacctctcgcacccaaagcgagaatgataccactaggaccaaatgccctg 48048640  T

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Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 48054381 - 48054322
Alignment:
Q  70 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactaga 129  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||  |||||||    
T  48054381 ggcattctgagaatcgaactcaggacctctcgcacccaaagcgagaatcatttcactaga 48054322  T

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Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 49152534 - 49152608
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49152534 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 49152608  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 38393563 - 38393634
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38393563 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38393634  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 26929299 - 26929355
Alignment:
Q  78 gagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaa 134  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  26929299 gagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 992442 - 992513
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  992442 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 992513  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 10754597 - 10754674
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttg 145  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  10754597 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccctttttg 10754674  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 10750280 - 10750357
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttg 145  Q
    ||||||||| |||||| |||||| |||||||| |||||| |||||||||||||||||||||| |||||||||| ||||    
T  10750280 ggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgccctttttg 10750357  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 32678635 - 32678690
Alignment:
Q  85 gaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 140  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32678635 gaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatgccct 32678690  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 18613160 - 18613088
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    |||||||||| ||||||  ||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  18613160 tggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgccc 18613088  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 10748684 - 10748756
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 140  Q
    ||||||||| |||||| || |||  |||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  10748684 ggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgccct 10748756  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 550
Target Start/End: Original strand, 12264313 - 12264377
Alignment:
Q  487 tgtttgcttggaggcttattcaaaatagattgcctacaag-gataatttacatcgacgtggtatt 550  Q
    ||||||||||||||| ||||   |||||||| || ||||| ||||||||||||||||||||||||    
T  12264313 tgtttgcttggaggcatattagtaatagatttcccacaagtgataatttacatcgacgtggtatt 12264377  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 23780541 - 23780469
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    |||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23780541 tggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 23780469  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 43920678 - 43920607
Alignment:
Q  68 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43920678 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 43920607  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 40706178 - 40706106
Alignment:
Q  67 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 139  Q
    |||||||||| |||||| |||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  40706178 tggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgccc 40706106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 46064798 - 46064854
Alignment:
Q  78 gagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaa 134  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  46064798 gagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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