View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_13 (Length: 458)
Name: NF8241_low_13
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Complemental strand, 271023 - 270588
Alignment:
| Q |
6 |
gtatataattctacaaaggatgttccaaggccagaaagaatggctacttaattgagtttaatcatcatacacaccgatgcaacagtgtgacacaaaccat |
105 |
Q |
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| T |
271023 |
gtatataattctacaaaggatgttccaaggccggaaagaatggctacttaattgagtttaatcatcatacacaccgatgcaacagtgtgacacaaaccat |
270924 |
T |
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| Q |
106 |
caatcatatccaactcatcatttctcaaaataactgcacaaatatttacatggtattatggtaagatatggaccgggatttgttgcaaataccgcaacat |
205 |
Q |
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| T |
270923 |
caatcatatccaactcatcatttctcaaaataactgcacaaatatttacatggtattatggtaagatatggaccgggatttgttgcaaataccgcaacat |
270824 |
T |
|
| Q |
206 |
gcagtttcacattgtaagtgatcttactcgttgatttgagatctgacagttcaaaatacacagttaatcgatctcagccatcaattcaaatcggacgggc |
305 |
Q |
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| T |
270823 |
gcagtttcacattgtaagtgatcttactcgttgatttgagatctgacagttcaaaatacacagttaatcgatctcagccatcaattcaaatcggacgggc |
270724 |
T |
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| Q |
306 |
aagatacagtactacattacgcagttactccgtctaatccaaatccataagatatgacaaatgtttttataannnnnnnctacaccaactatgcataaca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
270723 |
aagatacagtactacattacgcagttactccgtctaatccaaatccataagatatgacaaatgtttttataatttttttctacaccaactatgcataaca |
270624 |
T |
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| Q |
406 |
attaagtccatattcatatttttcataaactgaact |
441 |
Q |
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| T |
270623 |
attaagtccatattcatatttttcataaactgaact |
270588 |
T |
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