View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_14 (Length: 452)
Name: NF8241_low_14
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 38868004 - 38868429
Alignment:
| Q |
13 |
ttggtgttaatcaatcagcaaacaattggctgtgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctcccaa |
112 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
38868004 |
ttggtgttaatcaatcagctaacaattggctgtgttggaaggacataaaccattgcatattctatgttttaaacgatgtgagacattttattgctcccaa |
38868103 |
T |
|
| Q |
113 |
gacaattaatgatcttatgttggaaatatgcatgtcacacatcatatgcaaatttacccactctgatcataactcatgattatacacaataatttatgag |
212 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38868104 |
gacaattaatggtcttatgttggaaatatgcatgtcacatatcatatgcatatttacccactctgatcataagtcatgattatacacaataatttatgag |
38868203 |
T |
|
| Q |
213 |
cttgtttatagtggcatgtatatacttgccggctcttaatcatgtcaaatgattcagctgcaccacagaaattaacctggcctcaaatctagtggctttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38868204 |
cttgtttatagtggcatgtatatacttgccggctcttaatcatgccaaatgattcagctgcaccacagaaattaacctggtctcaaatctagtggctttg |
38868303 |
T |
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| Q |
313 |
aatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctcaaagacattcctacagtcttccaaagtacttttgattatggtaaaagc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38868304 |
aatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctcaaagacattcctatagtcttccaaagtacttttgattatggtaaaagc |
38868403 |
T |
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| Q |
413 |
atataactgttctaatttgtgaacat |
438 |
Q |
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| T |
38868404 |
atataactgttctaatttgtgaacat |
38868429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 38807377 - 38807226
Alignment:
| Q |
13 |
ttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctccca |
111 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
38807377 |
ttggtgttaatcaactcagcaaacaattggctgtgttggaagcctataaaccattgcattaattatgttttaaacgatgtgggacattttattgctccca |
38807278 |
T |
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| Q |
112 |
agacaattaatgatcttatgttggaaatatgcatgtcacacatcatatgcaa |
163 |
Q |
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||||| ||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
38807277 |
agacagttagtggtcttatgttggaaatatgcatgtcacacatcatatgcaa |
38807226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 38866041 - 38866193
Alignment:
| Q |
13 |
ttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgct-ccc |
110 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||| |||||| ||| ||||||||||||||||||||| ||| |
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| T |
38866041 |
ttggtgttaatcaactcagcgaacaattggctgtgttggaagtttataaacaattgcatattttatgttctaaccgatgtgggacattttattgctcccc |
38866140 |
T |
|
| Q |
111 |
aagacaattaatgatcttatgttggaaatatgcatgtcacacatcatatgcaa |
163 |
Q |
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|||||| || || ||||||||||||||||||||||||||| |||||||||| |
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| T |
38866141 |
aagacacttggtggtcttatgttggaaatatgcatgtcacaggtcatatgcaa |
38866193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 39310785 - 39310881
Alignment:
| Q |
13 |
ttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctc |
108 |
Q |
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||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39310785 |
ttggtgtaaatcaactcagcgaacaattggctgtgttggaagtttataaaccattgcatattctatgttttaaacgatgtgggacattttattgctc |
39310881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 38750049 - 38749953
Alignment:
| Q |
13 |
ttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctc |
108 |
Q |
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||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |
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| T |
38750049 |
ttggtgttattcaactcagcaaacaaatggctgtgttggaaggttataaaccatttcatattctatgttctaaacgatgtgggacattttattgctc |
38749953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 38849053 - 38849149
Alignment:
| Q |
13 |
ttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattctatgttttaaaagatgtgggacattttattgctc |
108 |
Q |
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|||||||||||||| ||||||||||| | |||||||||||| |||||||| || ||||| || |||| |||| |||||||||||||||||||||| |
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| T |
38849053 |
ttggtgttaatcaactcagcaaacaaatccctgtgttggaagcttataaaccgtttcatatgctttgttctaaacgatgtgggacattttattgctc |
38849149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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