View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8241_low_15 (Length: 451)
Name: NF8241_low_15
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 17744797 - 17745215
Alignment:
| Q |
16 |
tgaaacagctgaataatcaactgcacttgcagttaccacactccattcaatgcttgcttcacttggtgcataaaaatttggactagtgcaaccagaagca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17744797 |
tgaaacagctgaataatcaactgcacttgcagttaccacactccattcaatgcttgcttcacttggtgcataaaaatttggactagtgcaaccagaagca |
17744896 |
T |
|
| Q |
116 |
acatgtgatgttgttgttcttgataaaaatgagcttgttttattaccagtgaaactttcaatctcaaataaatctgaacttgcatcacttccaannnnnn |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17744897 |
acatgtgatgttgttgttcttgataaaaatgagcttgttttattaccagtgaagctttcaatctcaaataaatctgaacttgcatcacttccaacatcat |
17744996 |
T |
|
| Q |
216 |
nnnnnnnnnnnnnncaatttgtagaaaaatcaatttcttgttcttcaagtttagtagcagcttcccaagatggtatttttagcctcatatcaaagcttat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17744997 |
catcatcatcatcacaatttgtagaaaaatcaatttcttgttcttcaagttttgaagcagcttcccaagatggtatttttagtctcatatcaaagcttat |
17745096 |
T |
|
| Q |
316 |
tgacttgcatctttcatctaatattggtgaaccaaacacttccaatgttttccttggattctctacttgttgaagttgcattttgtaaggagaaaccttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17745097 |
tgacttgcatctttcatctaatattggtgaaccaaacacttccaatgttttccttggattatctacttgttgaagttgcattttgtaaggagaaaccttt |
17745196 |
T |
|
| Q |
416 |
tcttgtttttgtaagtaga |
434 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
17745197 |
tcttgtttttgcaagtaga |
17745215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 24336907 - 24336875
Alignment:
| Q |
173 |
tcaatctcaaataaatctgaacttgcatcactt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24336907 |
tcaatctcaaataaatctgaacttgcatcactt |
24336875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 24337042 - 24337002
Alignment:
| Q |
38 |
gcacttgcagttaccacactccattcaatgcttgcttcact |
78 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
24337042 |
gcacttgcagttaccacactccattctatgcttgcctcact |
24337002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University