View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8241_low_18 (Length: 424)
Name: NF8241_low_18
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_18 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0223 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Complemental strand, 31104910 - 31104500
Alignment:
| Q |
14 |
cagagatcaaggcaagaaaggaaattgcagatcacggaaaatgcaaggactcctaaacgcaaaacata--aagcaagacatgatcagtcccaaattgaaa |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31104910 |
cagagatcaagacaagaaaggaaattgcagatcacggaaaatgcaaggactcctaaacgcaaaacatataaagcaagacatgatcagtcccaaattgaaa |
31104811 |
T |
|
| Q |
112 |
tgaggcgtgactcattattgtgatgaataaaacttgttgataggaaaatgtgagactcgaaccattgtgatgaaaagaacattgatatattagttagagg |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31104810 |
tgaggcgtgactcatt---gtgatgaataaaacttgttaataggaaaatgtgagactcgaaccattgtaatgaaaagaacattgatatattagttagagg |
31104714 |
T |
|
| Q |
212 |
tgttgcatttctctaaataataaaagcaatctttttagtattttttattgtttcaaaaaatgcacacaaatttctgaaatattagtat-ttttatggtcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31104713 |
tgttgcatttctctaaataataaaagcaatctttttagtattttttattgtttcaaaaaatgcacacaaatttctgaaatattagtattttttatggtcc |
31104614 |
T |
|
| Q |
311 |
atttagtccataaaattactgacaaaagagacattgagaatgtgtttgtaatttcgatacattcagcgattatagtatcaagtaacaacatcttacacat |
410 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31104613 |
atttagtctataaaattactgacaaaagagacattgagaatgtgtttgtaattttgatacattcagagattatagtatcaagtaacaacatcttacacat |
31104514 |
T |
|
| Q |
411 |
tcaatgaccaaaat |
424 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31104513 |
tcaatgaccaaaat |
31104500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 32272101 - 32272035
Alignment:
| Q |
311 |
atttagtccataaaattactgacaaaagagaca-ttgagaatgtgtttgtaatttcgatacattcag |
376 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
32272101 |
atttagtccataaaattactaacaaaagagacacctgagcatgtgtttgaaatttcgatacattcag |
32272035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 32498153 - 32498207
Alignment:
| Q |
321 |
taaaattactgacaaaagagacattgagaatgtgtttgtaatttcgatacattca |
375 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| |||||||| |||||||||| |
|
|
| T |
32498153 |
taaaattactaacaaaagagacatttaaaatgtgtatgtaattttgatacattca |
32498207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 42684124 - 42684181
Alignment:
| Q |
317 |
tccataaaattactgacaaaagagacattgagaatgtgtttgtaatttcgatacattca |
375 |
Q |
| |
|
|||||||||||||| |||||||||||| | | ||||||||||||||| |||||||||| |
|
|
| T |
42684124 |
tccataaaattactaacaaaagagacacttgggatgtgtttgtaattt-gatacattca |
42684181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 4124818 - 4124884
Alignment:
| Q |
305 |
tggtccatttagtccataaaattactgacaaaagagacattgagaatgtgtttgtaatttcgataca |
371 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||| || | || |||| |||||||| |||||||| |
|
|
| T |
4124818 |
tggtcaatttagtccatgaaattactaacaaaagaggcactaaggatgtatttgtaatatcgataca |
4124884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 8877205 - 8877266
Alignment:
| Q |
311 |
atttagtccataaaattactgacaaaagagacattgagaatgtgtttgtaatttcgatacatt |
373 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||| | ||||||||||| |||||||||||||| |
|
|
| T |
8877205 |
atttagtgcataaaattactaacaaa-gagacactatgaatgtgtttgcaatttcgatacatt |
8877266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 10211 - 10243
Alignment:
| Q |
311 |
atttagtccataaaattactgacaaaagagaca |
343 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
10211 |
atttagtccataaaattactaacaaaagagaca |
10243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 10407 - 10439
Alignment:
| Q |
311 |
atttagtccataaaattactgacaaaagagaca |
343 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
10407 |
atttagtccataaaattactaacaaaagagaca |
10439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University