View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8241_low_19 (Length: 413)

Name: NF8241_low_19
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8241_low_19
NF8241_low_19
[»] chr7 (5 HSPs)
chr7 (169-395)||(24508603-24508824)
chr7 (19-114)||(24511154-24511249)
chr7 (19-89)||(24510068-24510138)
chr7 (128-186)||(24508961-24509020)
chr7 (61-103)||(2046892-2046934)
[»] chr6 (1 HSPs)
chr6 (25-114)||(13146578-13146667)
[»] chr4 (2 HSPs)
chr4 (206-308)||(46301500-46301598)
chr4 (36-104)||(46632290-46632358)
[»] chr8 (1 HSPs)
chr8 (67-113)||(19400770-19400816)
[»] chr2 (1 HSPs)
chr2 (356-395)||(13486810-13486849)
[»] chr3 (1 HSPs)
chr3 (53-95)||(27427602-27427644)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 169 - 395
Target Start/End: Complemental strand, 24508824 - 24508603
Alignment:
Q  169 ataactttctcaatatttagcaaactactaaactagttaatatgaaatgagagaaatgagtgtaatacttacttattgattgtgaatgaggagtacattt 268  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||||| ||| |||||    
T  24508824 ataactttctcaatatttaacaaactactaaactagttaatatgaaatgagagaaatgagtgtgatactta----ttgattgtgaatgag-agtgcattt 24508730  T
Q  269 aatatttatatacaaggctattgtaatactaatatgtattgtagtacactataataacttgtactacaagttatacttctaagttttttcatggtgtaat 368  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  24508729 aatatttatatacaaggctattgtactactaatatgtattgtagtacactataataacttgtactacaagttatactactaagttttctcatggtgtaat 24508630  T
Q  369 atcctcccacaagttggaggttggtag 395  Q
    ||||||||||||||||||| |||||||    
T  24508629 atcctcccacaagttggagattggtag 24508603  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 24511154 - 24511249
Alignment:
Q  19 atcattggtcataactattagctatcaaaggtccaaacattatatcacatttaaattcaatatttaagtatatcataaagtagaacgaaatcaaag 114  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  24511154 atcataggtcataactattagctatcaaaggtgcaaacaatatatcacatttaaattcaatatgtaagtatatcataaagtagaacgtaaccaaag 24511249  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 24510138 - 24510068
Alignment:
Q  19 atcattggtcataactattagctatcaaaggtccaaacattatatcacatttaaattcaatatttaagtat 89  Q
    ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  24510138 atcataggtcataaccattagctatcaaaggtccaaacactatatcacatttaaattcaatatgtaagtat 24510068  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 24509020 - 24508961
Alignment:
Q  128 gcatctttagtataccatattaccttctttaggttcatttaat-aactttctcaatattt 186  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  24509020 gcatctttagtataccatattaccttctttacgttcatttaataaactttctcaatattt 24508961  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 2046934 - 2046892
Alignment:
Q  61 tatcacatttaaattcaatatttaagtatatcataaagtagaa 103  Q
    |||||||||||||||||| || || ||||||||||||||||||    
T  2046934 tatcacatttaaattcaagatgtatgtatatcataaagtagaa 2046892  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 13146578 - 13146667
Alignment:
Q  25 ggtcataactattagctatcaaaggtccaaacattatatcacatttaaattcaatatttaagtatatcataaagtagaacgaaatcaaag 114  Q
    ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  13146578 ggtcataaccattagctatcaaaggtccaaacactatatcacctttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaag 13146667  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 46301598 - 46301500
Alignment:
Q  206 taatatgaaatgagagaaatgagtgtaatacttacttattgattgtgaatgaggagtacatttaatatttatatacaaggctattgtaatactaatatgt 305  Q
    |||||||||||||||||||||||| ||||  || |  ||||||| ||||||| ||||||||||| |||| |||||||||||||||||| |||||||||||    
T  46301598 taatatgaaatgagagaaatgagtttaat--ttgc--attgattatgaatgaagagtacatttagtattcatatacaaggctattgtactactaatatgt 46301503  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 46632290 - 46632358
Alignment:
Q  36 ttagctatcaaaggtccaaa-cattatatcacatttaaattcaatatttaagtatatcataaagtagaac 104  Q
    ||||||| |||||||||||| || |||||||||| ||| |||||||| ||  ||||||||||||||||||    
T  46632290 ttagctaccaaaggtccaaaacactatatcacatataa-ttcaatatgtatctatatcataaagtagaac 46632358  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 19400816 - 19400770
Alignment:
Q  67 atttaaattcaatatttaagtatatcataaagtagaacgaaatcaaa 113  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||||    
T  19400816 atttaaattcaatatttatgtatataataaagtagaacgaaaccaaa 19400770  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 13486810 - 13486849
Alignment:
Q  356 ttcatggtgtaatatcctcccacaagttggaggttggtag 395  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  13486810 ttcattgtgcaatatcctcccacaagttggaggttggtag 13486849  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 27427602 - 27427644
Alignment:
Q  53 aaacattatatcacatttaaattcaatatttaagtatatcata 95  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||    
T  27427602 aaacattatataacatttaaactcaatatttatgtatatcata 27427644  T

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