View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_2 (Length: 653)
Name: NF8241_low_2
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 556; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 15 - 635
Target Start/End: Complemental strand, 30959348 - 30958727
Alignment:
| Q |
15 |
atgaacttgagactcnnnnnnnattcaatatgaaaaataatagagaataacactgaaggtaatgaatcataatcttaccctagtagaccaagcgctactg |
114 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30959348 |
atgaacttgagactctttttttattcaatatgaaaaataatagagaataacactgaaggtaatgaatcataatcttaccctagtagaccaagcgctgctg |
30959249 |
T |
|
| Q |
115 |
cggccttatacttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30959248 |
cggccttatacttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgtaagagaaatgttgtttgacatgatttccgc |
30959149 |
T |
|
| Q |
215 |
gaaattcacaaactaaagagatttcacaacaattcaggggatgaatttcaattattttgcaacatttaacaagtattaaatcaatattcattatctacct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30959148 |
gaaattcacaaactaaagagatttcacaacaattcaggggatgaatttcaattattttgcaacatttaacaagtattaaatcaatattcattatctacct |
30959049 |
T |
|
| Q |
315 |
gaaaattatcaaaggccc-tagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaa |
413 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30959048 |
gaaaattatcaaaggcccttagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaa |
30958949 |
T |
|
| Q |
414 |
atttactgtggcaacaaagtaggcagataaataagacaagatatttgtaaagttacaacatttattattgagaataatcacctggcctcaacaatggcat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30958948 |
atttactgtggcaacaaagtaggcagataaataagacaagatgtttgtaaagttacaacatttattattgagaataatcacctggcctcaacaatggcat |
30958849 |
T |
|
| Q |
514 |
ccattgnnnnnnnctcttgtggactaagccttccatgtcgagttcttgttacctgcaccaacttcttaagattagttctaccaccaacatccgaacttgg |
613 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30958848 |
ccattgtttttctctcttgtggactaagccttccatgtcgagttcttgttacctgcgccaacttcttaagattagttctaccaccaacatccgaacttgg |
30958749 |
T |
|
| Q |
614 |
atctttctacagttgcagtata |
635 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
30958748 |
atctttctacagttgcagtata |
30958727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 352 - 460
Target Start/End: Complemental strand, 30955172 - 30955067
Alignment:
| Q |
352 |
aaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaaatttactgtggcaacaaagtaggcagataaataagaca |
451 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||| |
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|
| T |
30955172 |
aaactccttcaccatgtcccaaggtccatctccaacaccaaccaatatgattgaaagaggaaattttctgtg---acaaattaagcagataaataagaca |
30955076 |
T |
|
| Q |
452 |
agatatttg |
460 |
Q |
| |
|
||||||||| |
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|
| T |
30955075 |
agatatttg |
30955067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 11688829 - 11688939
Alignment:
| Q |
125 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcaca |
224 |
Q |
| |
|
||||||||||||||| |||| ||| |||||| | || ||||||||||| |||||||||||| ||| | || |||||||| || |||| |||||||||| |
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|
| T |
11688829 |
cttatactgagaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcaca |
11688928 |
T |
|
| Q |
225 |
aactaaagaga |
235 |
Q |
| |
|
||||||||||| |
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|
| T |
11688929 |
aactaaagaga |
11688939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 311 - 422
Target Start/End: Original strand, 11689036 - 11689147
Alignment:
| Q |
311 |
acctgaaaattatcaaaggccctagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagag |
410 |
Q |
| |
|
||||| |||||||| ||||| | || ||||||||| || ||| || |||||| ||||||| |||||||||||||||||||||||||| ||||| |||| |
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|
| T |
11689036 |
acctggaaattatcgaaggcacgagatggaatattatcgtcaaattctttcatcatgtcccatggtccatctccaacaccaaccaatataattgaaagag |
11689135 |
T |
|
| Q |
411 |
gaaatttactgt |
422 |
Q |
| |
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||| ||||||| |
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|
| T |
11689136 |
gaagcttactgt |
11689147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 310 - 423
Target Start/End: Complemental strand, 7474234 - 7474121
Alignment:
| Q |
310 |
tacctgaaaattatcaaaggccctagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgataga |
409 |
Q |
| |
|
||||||||||||||| |||||||| | ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
7474234 |
tacctgaaaattatcgaaggccctggctggcatattgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaaga |
7474135 |
T |
|
| Q |
410 |
ggaaatttactgtg |
423 |
Q |
| |
|
|||||||||||||| |
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|
| T |
7474134 |
ggaaatttactgtg |
7474121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 7474443 - 7474336
Alignment:
| Q |
125 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcaca |
224 |
Q |
| |
|
||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||| ||| |||||| || ||||| | ||||| |||||||||| |
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|
| T |
7474443 |
cttatactgagaaggaatttccatcaatgctgcgagagcaaatgctgcctcttttcgtgaaggaggaatgttcttcgacataagttccgtgaaattcaca |
7474344 |
T |
|
| Q |
225 |
aactaaag |
232 |
Q |
| |
|
|||||||| |
|
|
| T |
7474343 |
aactaaag |
7474336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 44131205 - 44131152
Alignment:
| Q |
359 |
ttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagagga |
412 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||| || ||||| |||||| |
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|
| T |
44131205 |
ttcatctcgtcccatggtccatctccaactccaaccaaaataattgagagagga |
44131152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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