View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_21 (Length: 407)
Name: NF8241_low_21
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 32664579 - 32664967
Alignment:
| Q |
1 |
ccttggcagaaatagtaggaagtggatgaccctggatattatcggcaacaacatagtaattggctaaaacaacaacgtgtgtttggatatcctgcgacac |
100 |
Q |
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| T |
32664579 |
ccttggcagaaatagtaggaagtggatgaccctggatattatcggcaacaacatagtaattggctaaaacaacaacgtgtgtttggatatcctgcgacac |
32664678 |
T |
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| Q |
101 |
gcacttagttcctgaactagggatacttaaccaaatggcgttggtttgagggatattaataagagaggtgaaacataacaataaaatactaagaacaatt |
200 |
Q |
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| T |
32664679 |
gcacttagttcctgaactagggatacttaaccaaatggcgttggtttgagggatattaataagagaggtgaaacataacaataaaatactaagaacaatt |
32664778 |
T |
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| Q |
201 |
cgtgttccgttgaagccttttgccataaccgatggttgactgtggaataaaataggattgtcgaatacaaagtggttcagatctaaccccgagagaaaga |
300 |
Q |
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| T |
32664779 |
cgtgttccgttgaagccttttgccataaccgatggttgactgtggaataaaataggattgtcgaatacaaagtggttcagatctaaccccgagagaaaga |
32664878 |
T |
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| Q |
301 |
aagaggacaagacaccacaaagtacatagactttggtgtatggagaaaaaatcgagggactcaagtcggcgtgtatactaaaccaccaaa |
390 |
Q |
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| T |
32664879 |
aagaggacaagacaccac-aagtacaaagcctttggtgtatggagaaaaaatcgagggactcaagtcggcgtgtatactaaaccaccaaa |
32664967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 24025988 - 24026061
Alignment:
| Q |
45 |
gcaacaacatagtaattggctaaaacaacaacgtgtgtttggatatcctgcgacacgcacttagttcctgaact |
118 |
Q |
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| T |
24025988 |
gcaacaacatagtaatcagctaaaacaacgacatgtgtttgaatatcctcagacacacatttagtacctgaact |
24026061 |
T |
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