View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_22 (Length: 406)
Name: NF8241_low_22
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 201 - 393
Target Start/End: Original strand, 38421702 - 38421894
Alignment:
| Q |
201 |
ttagcttcttatcaatagaattctcctcaaagatttgagagttaaactgagaacatatgaagaactgatttagaacttgcaacatgtcttttgattttca |
300 |
Q |
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| T |
38421702 |
ttagcttcttatcaatagaattctcctcaaagatttgagagttaaactgagaacatatgaagaactgatttagaacttgcaacatgtcttttgattttca |
38421801 |
T |
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| Q |
301 |
agagccaaaaatgtttattgacatagaaaatatctctattcaatgaatatattgaaaaagagatttgctcaaatatacctgaaggatcttttt |
393 |
Q |
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| T |
38421802 |
agagccaaaaatgtttattgacatagaaaatatctctattcaatgaatatattgagaaagagatttgctcaaatatacctgaaggatcttttt |
38421894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 38421526 - 38421665
Alignment:
| Q |
20 |
agagaaggcaataatataatgtatgcatataaaacagtaaaatttgtagcacgtaaagtttagttctttactaaggtaagtttcagagtaatatacttta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38421526 |
agagaaggcaataatataatgtatgcatataaaacagtaaaatttggagcacgtaaagtttagttctttactaaggtaagtttcagagtaatatacttta |
38421625 |
T |
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| Q |
120 |
acaaaccatggattgtgttgaaatagcatgattcataagg |
159 |
Q |
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| T |
38421626 |
acaaaccatggattgtgttgaaatagcatgattcataagg |
38421665 |
T |
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