View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_24 (Length: 396)
Name: NF8241_low_24
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 34148463 - 34148086
Alignment:
| Q |
1 |
ggctgattattgagattggtggtgtgaaatccttaataggatgtttacatggaattgcactaatgcgtaaactgaaaaagaatgatttgaatttaaccaa |
100 |
Q |
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| T |
34148463 |
ggctgattattgagattggtggtgtgaaatccttaataggatgtttacatggaattgcactaatgcgtaaactgaaaaagaatgatttgaatttaaccaa |
34148364 |
T |
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| Q |
101 |
tgaaataaattcagaagaagaacaaaatccttgtcctagaccagatggattaccaaaatctgctgatgaaatgatggaagaggagcaagcaaaaatgcct |
200 |
Q |
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| T |
34148363 |
tgaaatatattcagaagaagaacaaaatccttgtcctagaccagatggattaccaaaatctgctgatgaaatgatggaagaggagcaagcaaaaatgcct |
34148264 |
T |
|
| Q |
201 |
gattcatcgtatactaaacttcttagatccatgggaaagtcacctgcatggtattctgaagcaccagatcatgaaacagattgatgattttgtttcagtt |
300 |
Q |
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| T |
34148263 |
gattcatcatatactaaacttcttagatccatgggaaagtcacctgcatggtattctgaagcaccagatcatgaaacagattgatgattttgtttcagtt |
34148164 |
T |
|
| Q |
301 |
tatagggagggattaatgatgtgaatgtgttagtcgtaggctagttatggatatgaatgaattatggaatagctgtat |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34148163 |
tatagggagggattaatgatgtgaatgtgttagtcgtaggctagttatggatatgaatgaattatggaatagctgtat |
34148086 |
T |
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