View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8241_low_26 (Length: 391)

Name: NF8241_low_26
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8241_low_26
NF8241_low_26
[»] chr6 (1 HSPs)
chr6 (20-375)||(13627831-13628186)
[»] chr7 (4 HSPs)
chr7 (98-204)||(9416179-9416284)
chr7 (310-376)||(4634017-4634083)
chr7 (264-318)||(22763439-22763493)
chr7 (311-376)||(32238934-32238999)
[»] chr1 (1 HSPs)
chr1 (310-365)||(23971075-23971130)
[»] chr8 (2 HSPs)
chr8 (314-376)||(15151308-15151370)
chr8 (314-365)||(16822009-16822060)
[»] chr3 (1 HSPs)
chr3 (310-364)||(9021814-9021868)
[»] chr2 (1 HSPs)
chr2 (310-365)||(19569593-19569648)
[»] chr4 (1 HSPs)
chr4 (315-365)||(17405187-17405237)


Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 13628186 - 13627831
Alignment:
Q  20 gtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcctacaccaacaaatagaattaagccattatcaccatctttcaaatagttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13628186 gtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcctacaccaacaaatagaattaagccattatcaccatctttcaaatagttt 13628087  T
Q  120 caaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactattgcaagcaatttgtgcggctttgtagtgtgctgctgttaggagggaag 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13628086 caaaatcttattctaaacttgtgtagcttcgaagtttgaattcttccactattgcaagcaatttgtgcggctttgtagtgtgctgctgttaggagggaag 13627987  T
Q  220 tgcctaaggtaaggcttttttcccatacatttttaccaaatgctaaattgatattgaatctcaaaagggtgctctacataaaaaatttggcaaagattca 319  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13627986 tgcctaaggtaaggcttttttcccatacatttttaccaagtgctaaattgatattgaatctcaaaagggtgctctacataataaatttggcaaagattca 13627887  T
Q  320 tacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttca 375  Q
    || |||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  13627886 tatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttca 13627831  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 9416284 - 9416179
Alignment:
Q  98 atcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactattgcaagcaatttgtgcggctttgtag 197  Q
    |||||||||||||||||| |||| || |||||||| ||||||| |||||||  || |||||||| ||||  | ||||||||| ||| |||||||||||||    
T  9416284 atcaccatctttcaaataatttccaagtcttattccaaacttg-gtagctttaaattttgaatctttcccatgttgcaagcattttctgcggctttgtag 9416186  T
Q  198 tgtgctg 204  Q
    | |||||    
T  9416185 tatgctg 9416179  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 4634017 - 4634083
Alignment:
Q  310 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttcat 376  Q
    |||||||||||| |||| ||||||||||||||||||| ||   ||||||||||||| || |||||||    
T  4634017 caaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcat 4634083  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 22763493 - 22763439
Alignment:
Q  264 aaattgatattgaatctcaaaagggtgctctacataaaaaatttggcaaagattc 318  Q
    ||||||||||||||||||||||||||||||| |||| |   ||||||||||||||    
T  22763493 aaattgatattgaatctcaaaagggtgctctccatatattttttggcaaagattc 22763439  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 32238934 - 32238999
Alignment:
Q  311 aaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttcat 376  Q
    ||||||||||||||| |||||| ||||| ||||||||||   || |||||||||| ||| ||||||    
T  32238934 aaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttttggttcat 32238999  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 23971075 - 23971130
Alignment:
Q  310 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 365  Q
    ||||||||||||||||||||||||||||| ||||||||||   |||||||||||||    
T  23971075 caaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtc 23971130  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 376
Target Start/End: Complemental strand, 15151370 - 15151308
Alignment:
Q  314 gattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttcat 376  Q
    |||| ||||||||||| |||||||||||||||||||   ||||||||||||| ||||||||||    
T  15151370 gatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttttcgttcat 15151308  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 16822060 - 16822009
Alignment:
Q  314 gattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 365  Q
    ||||||||||||||||||||||| | ||||||||||   |||||||||||||    
T  16822060 gattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtc 16822009  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 9021814 - 9021868
Alignment:
Q  310 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagt 364  Q
    |||||||||||||||||||| |||||||| ||||||||||   ||||||||||||    
T  9021814 caaagattcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagt 9021868  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 19569648 - 19569593
Alignment:
Q  310 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 365  Q
    |||| ||||||| |||||||||||||||| ||||||||||   |||||||||||||    
T  19569648 caaaaattcatatttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtc 19569593  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 17405187 - 17405237
Alignment:
Q  315 attcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 365  Q
    ||||||||||||||| |||||||| ||||||||||   |||||||||||||    
T  17405187 attcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtc 17405237  T

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