View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_27 (Length: 386)
Name: NF8241_low_27
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 17205550 - 17205844
Alignment:
| Q |
8 |
cgagtgagaagaaaacacatcaaaaagactcgcgttggtttgcgggattaatcggcaattctcaaagtcgtttggaatgttataggttctaccaattttc |
107 |
Q |
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| T |
17205550 |
cgagtgagaacaaaacacaccgaaaagactcgcgttgatttgcgggattagtcggcaattctcaaagttgtttggaatgttataggttcgaccaattttc |
17205649 |
T |
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| Q |
108 |
atcaaattcatgtaaaatattttcattcataaatgcttaattattctcatattactttaatgtttggattggttgtattttcnnnnnnntacatgagggg |
207 |
Q |
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| T |
17205650 |
atcaaattcatgtaaaatattttcattcataaatgcttaattattctcatattactttaatgtttggattggttgtattttc-aaaaaatacatgaggg- |
17205747 |
T |
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| Q |
208 |
tacgtaccttattcgatagtatatcgagaaaaattgaggtatgtgtgctcgaatgaatgatgtgtccataacnnnnnnnaacttctccatcaatggttaa |
307 |
Q |
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| T |
17205748 |
---gtaccttattcgatagtatatcgagaaaaattgaggtatgtgtgctcgaatgaatgatgtgtttataacttcttttaacttctccatcaatggttaa |
17205844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 17205874 - 17205952
Alignment:
| Q |
309 |
ttgttgtgattgtttcatttcttagcttgcacttatgtgtgcagttccttgaccaagagctggatgttct-caacgtct |
386 |
Q |
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| T |
17205874 |
ttgttgtgattgtttcatttcttagcttgcacttgtgtgtgcagttccttgaccaagagctggatgttctgcaacgtct |
17205952 |
T |
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