View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_30 (Length: 375)
Name: NF8241_low_30
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 9222921 - 9222565
Alignment:
| Q |
1 |
ttgcattctcgttagtgacataaattacggtggcaacaataatttacctataaaagtttgtgttttagcacataaagtaattgtgtattggctaaatttt |
100 |
Q |
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| T |
9222921 |
ttgcattctggttagtgacataaattacggtggcaacaataatttacctataaaagtttgtgttttagcacataaagtaattttgtattggctaaatttt |
9222822 |
T |
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| Q |
101 |
tcaaatatccaaaataatagagacaccgtcataattctatatggtctaaatttttatctatctcatcatatgagtttaaactttaaattgatataaaaga |
200 |
Q |
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| T |
9222821 |
tcaaatatccaaaataataga--caccgtcataattctatatggtctaaatttttatctatctcatcgtatgagtttaaactttaaattgatataaaaga |
9222724 |
T |
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| Q |
201 |
cgtggttggaaggaaagaatacactaaagtggtcaggtttctcaaccgagattagtcatccctaatatgcgtggcataaactatccaattcacaattatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |
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| T |
9222723 |
cgtggttggaaggaaagaatacactaaagtggtctggtttctcgaccgagattagtcatccgtaatatgtgtggcataaactatccaattcacaatcatc |
9222624 |
T |
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| Q |
301 |
aac-nnnnnnnntctaatttgtcttatggttcataatctaattcatattgttttatggt |
358 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9222623 |
aacaaaaaaaaatataatttgtcttatggttcataatctaattcatattgttttatggt |
9222565 |
T |
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