View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_31 (Length: 366)
Name: NF8241_low_31
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 342
Target Start/End: Original strand, 8311589 - 8311912
Alignment:
| Q |
14 |
agcagagatgataaagattattcttgtggccttagaaataataataccctttggatgttagcaattggtggaggcgtgtgaatctgatggtatgaagaat |
113 |
Q |
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| T |
8311589 |
agcagagatgataaagattattcttgtggccttagaaata---ataccctttggatggtagcaattggtggaggcgtgtgaatctgatggtatgaagaat |
8311685 |
T |
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| Q |
114 |
atgcagacttaatgatagaggcgtgagtttttctcagggagagagatgatataggataacgcaatttcaacgaaga-ggggtagaattaaaggatattca |
212 |
Q |
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| T |
8311686 |
atgcagacttaatgatagaggcgtgagtttttctcagggagagagatgatataggataacgcaatttcaacgaagagggggtagaattaaaggatattca |
8311785 |
T |
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| Q |
213 |
ttctttgagttttctagggatattccatgaggattagagaaggaacacgtgaagtaggacaagtatcaaaataattttgtatgagtaagaggcattagt- |
311 |
Q |
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| T |
8311786 |
ttctttgagttttctagggacattccatgaggattagagaaggaacacgtgaagtaggacaagtaccaacataattttgtatgagtaagaggcattagta |
8311885 |
T |
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| Q |
312 |
atgaacttatatatataactacacacctgac |
342 |
Q |
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| T |
8311886 |
atgaact----tatataactacacacctgac |
8311912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 33793622 - 33793498
Alignment:
| Q |
16 |
cagagatgataaagattattcttgtggccttagaaataataataccctttggatgttagcaattggtggaggcgtgtgaatctgatggtatgaagaatat |
115 |
Q |
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| T |
33793622 |
cagagatgatatagatcattcttgtggccttggaaattatat---cttttggattgtaccaattggtggtggcttgtgaatctaatggtatgaagaatat |
33793526 |
T |
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| Q |
116 |
gcagacttaatgatagaggcgtgagttt |
143 |
Q |
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| T |
33793525 |
gcagacttaataatagagacgtgagttt |
33793498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 33793359 - 33793310
Alignment:
| Q |
169 |
ataacgcaatttcaacgaagaggggtagaattaaaggatattcattcttt |
218 |
Q |
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| T |
33793359 |
ataacacaatttcaactaagaggggaagaattaaagaatattcattcttt |
33793310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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