View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8241_low_32 (Length: 359)
Name: NF8241_low_32
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 40039148 - 40039459
Alignment:
| Q |
8 |
ttggtgttgaagccagaaatcatacatagtataagcaaaataagctacagtagtaggcactttgacctgaaaaaactgagcctaatacaaaactcattag |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| || |
|
|
| T |
40039148 |
ttggtgttgaagccagatatcatacatagtataagcaaaataagcta--------ggcactttgccctga-----------ctaatacaaaactcataag |
40039228 |
T |
|
| Q |
108 |
aaacctagtatgtgcaaaatacagtacaaatttacatgactatgccatacatacattcaaggaaatgtctcagattttttagtactataatgaagagaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40039229 |
aaacctagtatgtgcaaaatacagtacaaatttacatgactat-----acatacattcaagcaaatgtctcagattttttagtactataatgaagagaaa |
40039323 |
T |
|
| Q |
208 |
catgtttttgaaaagtagcaattggagaaacatgttgaaaacttttaagattagtttgacaaccaccatgagcaatcaaaaccaaagcaacttgcaaatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40039324 |
catgtttttgaaaagtagcaattggagaaacatgttgaaaacttttaagattagtttgacaaccaccatgagcaatcaaaaccaaagcaacttgcaaatg |
40039423 |
T |
|
| Q |
308 |
tccagcttcagcagcacaatgcaaaggagtgtaacc |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
40039424 |
tccagcttcagcagcacaatgcaaaggagtgtaacc |
40039459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University