View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_33 (Length: 354)
Name: NF8241_low_33
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 49278687 - 49278370
Alignment:
| Q |
17 |
attacaaatgatttttgaaaaagacagcagaaaattgattatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaa |
116 |
Q |
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| T |
49278687 |
attacaaatgatttttgaaaaagacagcagaaaattgattatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaa |
49278588 |
T |
|
| Q |
117 |
attagtttattatatctatatgaggaggggtcaagttacacacgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttct |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49278587 |
atttgtttattatatctatatgaggaggggtcaagttacacacgatgcatatggcatgtatgtcactcatacactattttaggattttccatatttttct |
49278488 |
T |
|
| Q |
217 |
ccacacctccctgatatcctcctccgctcaaagatttggcttgttttcattcttgataaattcgggacaaactttgtcgctgtgtttagcatggctctac |
316 |
Q |
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| T |
49278487 |
ccccacctccctgatatc---ctccgctcaaagatttggcttg-tttcattcttgataaattcgggataaacttcgtcgctgtgtttagcatggctctac |
49278392 |
T |
|
| Q |
317 |
acgaaaatattatactaattgt |
338 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
49278391 |
acgaaaatattatactaattgt |
49278370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 49285402 - 49285302
Alignment:
| Q |
56 |
tatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaaattagtttattatatctatatgaggaggggtcaagttac |
155 |
Q |
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| T |
49285402 |
tatcggtgtctatttttggctcacctattcatttcttgtgttgggatttatgcttaataaaatttcctgattatatctgcatgaggagggatcaagttac |
49285303 |
T |
|
| Q |
156 |
a |
156 |
Q |
| |
|
| |
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| T |
49285302 |
a |
49285302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 862084 - 862026
Alignment:
| Q |
168 |
tggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
227 |
Q |
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| T |
862084 |
tggcatgtatgtcactcatccactagtttatga-tttccatctttttctccccacctccc |
862026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 7938451 - 7938520
Alignment:
| Q |
158 |
acgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
227 |
Q |
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| T |
7938451 |
acgatacatgtggcatgtatgccactcatccactattttaggattttccatatttttctcccaacctccc |
7938520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 52329253 - 52329193
Alignment:
| Q |
157 |
cacgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttctc |
217 |
Q |
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|||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52329253 |
cacgatacatgtggcatgtatgctactcatccactattttaggattttccatatttttctc |
52329193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 31416027 - 31415992
Alignment:
| Q |
188 |
cactattttaggattttccatatttttctccacacc |
223 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
31416027 |
cactattttaggattttccatatttttctccccacc |
31415992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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