View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_35 (Length: 340)
Name: NF8241_low_35
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 2365280 - 2364970
Alignment:
| Q |
11 |
aacctgtgcaagaaacataaggagaaataaaccattcacaaatacattgatccagtggtttagctataatttcatttttatcaatgttgtaaacaaggat |
110 |
Q |
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| T |
2365280 |
aacctatgcaagaaacataaggagaaataaaccattcacaaatacattgatccagtggtttagctataatttcatttttatcaatgttgtgaacaaggat |
2365181 |
T |
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| Q |
111 |
tgcaaaaagtagaggtttgttcaaattctgaacaaaccacttccatttgtgaaaaatataaaccaacatcaggtagatcataaaagattgtttatatgca |
210 |
Q |
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| T |
2365180 |
cgcaaaaagtagaggtttgttcaaattctgaacaaaccacttccatttgtgaaaaatataaaccaacatcaggtagatcataaaagattgtttatatgca |
2365081 |
T |
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| Q |
211 |
tgctaatatatttattacnnnnnnnaaaaatggaaatcgaatatataaataaaggaagaagccgaagcaagtacaaggagtacttgaatcgctgatatgt |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
2365080 |
tgctaatatatttattactttttttaaaaatggaaatcgaatatataaataaaggaagaagccgaagcaagtacaaggagtactcgaatcgc---tatgt |
2364984 |
T |
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| Q |
311 |
ttattactgataac |
324 |
Q |
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|||||||||||||| |
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| T |
2364983 |
ttattactgataac |
2364970 |
T |
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