View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_39 (Length: 314)
Name: NF8241_low_39
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 26641875 - 26641594
Alignment:
| Q |
20 |
ggaagctgctgactgagttgaaaatagacatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaaaatgttgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26641875 |
ggaagctgctgactgagttgaaaatagacatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaaaatgttgt |
26641776 |
T |
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| Q |
120 |
caagaacgtgacaacagcggatgacgatgctgaatatgttgttgttgattagaattaattttgccttcaaaattgatattaacttgacactgcgactttt |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26641775 |
caagaacgtgacaacagcagatgacgatgctgaatatgttgttgttgattagaattaattttaccttcaaaattgatattaacttgacactgcgactttt |
26641676 |
T |
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| Q |
220 |
agcttttgacttcaaacttgatttcttttcactcaaatctattattcaactcggttttataaattctcgaactttttgttct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26641675 |
agcttttgacttcaaacttgatttcttttcactcaaatctattattcaactcggttttataaattctcgaactttttgttct |
26641594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 26656656 - 26656470
Alignment:
| Q |
20 |
ggaagctgctgactgagttgaaaatagacatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaaaatgttgt |
119 |
Q |
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|||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| || | || | ||||||| |||| |
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| T |
26656656 |
ggaagctgctgaatgagttgaaaatagatgtgggacaaatcaaagaattgctgttggaattcaagaagaaaacacctcccacagacgatgaaaattttgt |
26656557 |
T |
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| Q |
120 |
caagaacgtgacaacagcggatgacgatgctgaatatgttgttgttgattagaattaattttgccttcaaaattgatattaacttga |
206 |
Q |
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|| |||||||||||||| |||||||| | |||||| ||||||||| ||| ||||| ||||||| || ||||||||| |||| |||| |
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| T |
26656556 |
caggaacgtgacaacaggggatgacggtcctgaatttgttgttgtcaattcgaattgattttgcatttaaaattgattttaagttga |
26656470 |
T |
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