View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_4 (Length: 590)
Name: NF8241_low_4
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 177 - 466
Target Start/End: Complemental strand, 41308421 - 41308148
Alignment:
| Q |
177 |
tttcttttagatattcatataagttatgagacctgttattctgtgaagcagattagcaaatgaccattagcattaagatgctcccaattctacttgcctt |
276 |
Q |
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| T |
41308421 |
tttcttttagatattcatatgagttatgagacctgttattctgtgaagcagattagcaaa----------------gatgctcccaattctacttgcctt |
41308338 |
T |
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| Q |
277 |
gcacagtacggtgtgttgttttctaaaaatattgttgattcacataacgaatcaaacatcattgatgattcaaaaggcaaatactaatattaaacacagc |
376 |
Q |
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| T |
41308337 |
gcacagtacggtgtgttgttttctaaaaatattgttgattcacataacgaatcaaacatcattgatgattcaaaaggcaaatactaatattaaacacagc |
41308238 |
T |
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| Q |
377 |
acggtgnnnnnnnnnaaaagaagattctataaaataaagttagaatctattaccaacataagggtaagaatcttatagaattgatgctac |
466 |
Q |
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| T |
41308237 |
acggtgttttttttttaaagaagattctataaaataaagttagaatctattgccaacataagggtaagaatcttatagaattgatactac |
41308148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 41308577 - 41308486
Alignment:
| Q |
18 |
agaatccggttcgaaatcatggcaagaacaatttttagaccattattacttacctcttgatcacaatttaaattactaagatctcttatttt |
109 |
Q |
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| T |
41308577 |
agaatccggttcgaaatcatggcaagaacaatttttagaccattattacttacctcttgatcacaatttaaattactaagatctcttatttt |
41308486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 467 - 529
Target Start/End: Complemental strand, 41305624 - 41305564
Alignment:
| Q |
467 |
atcttgctaaaagaaaattaacatattaatatgcaatcaaatagtgactatcaggcttcctcc |
529 |
Q |
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| T |
41305624 |
atcttgttaaaagaaaattaacatattaatatgcaatcaaatagtgacta--aggcttcctcc |
41305564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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