View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8241_low_40 (Length: 313)

Name: NF8241_low_40
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8241_low_40
NF8241_low_40
[»] chr6 (6 HSPs)
chr6 (14-271)||(17206042-17206299)
chr6 (115-235)||(34659170-34659290)
chr6 (194-241)||(20395885-20395932)
chr6 (194-241)||(20395566-20395613)
chr6 (188-241)||(20395206-20395259)
chr6 (194-241)||(20396203-20396250)
[»] chr8 (2 HSPs)
chr8 (105-247)||(18565166-18565307)
chr8 (172-241)||(5825135-5825202)
[»] chr1 (3 HSPs)
chr1 (194-242)||(39476562-39476610)
chr1 (196-241)||(19475016-19475061)
chr1 (191-231)||(9757307-9757347)
[»] chr5 (5 HSPs)
chr5 (201-263)||(18303659-18303722)
chr5 (202-241)||(24886036-24886075)
chr5 (194-271)||(12063386-12063464)
chr5 (186-234)||(9823552-9823601)
chr5 (206-235)||(12046548-12046577)
[»] chr3 (1 HSPs)
chr3 (158-234)||(10878612-10878686)
[»] scaffold0772 (1 HSPs)
scaffold0772 (186-236)||(360-410)
[»] scaffold0578 (1 HSPs)
scaffold0578 (196-241)||(5870-5915)
[»] scaffold0032 (1 HSPs)
scaffold0032 (193-242)||(78640-78689)
[»] chr2 (2 HSPs)
chr2 (206-239)||(24216861-24216894)
chr2 (172-271)||(21822846-21822946)
[»] chr7 (2 HSPs)
chr7 (193-228)||(20052633-20052668)
chr7 (193-241)||(10984185-10984233)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 17206042 - 17206299
Alignment:
Q  14 ttcttacctgagaactttatttcaaatctagtaggcaaagtgctcgatattaggcctccaatgtttatcctttgaagggggaggggagatgtgaaggtgg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  17206042 ttcttacctgagaactttatttcaaatctagtaggcaaagtgctcgatattaggcctccaatgtttagcctttgaagggggaggggagatgtgaaggttg 17206141  T
Q  114 aaaaaacacaagaagggaaattgaattttgttgtcattttaaaagtttctttttctttagtgtttataaaatacctagtcagaatcggatgttgcagatt 213  Q
     ||||||||||||||| |  ||||||||||||| | |||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||    
T  17206142 gaaaaacacaagaaggaatgttgaattttgttgccgttttaagagtttctttttctttggtgtttataaaatatctagtcagaatcggatgttgtagatt 17206241  T
Q  214 ctgactcagagtctgaatgcagcggaaaacataacagaaaaataaagagttagagaga 271  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17206242 ctgactcagagtctgaatgcagcggaaaacataacacaaaaataaagagttagagaga 17206299  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 34659170 - 34659290
Alignment:
Q  115 aaaaacacaagaagggaaa-ttgaattttgttgtcattttaaaagtttctttttctttagtgtttataaaatacctagtcagaatcggatgttgcagatt 213  Q
    ||||||||||||||| ||| ||||||| ||||| | || | || |||||||||||||| ||||| |||| | |||| |||||||||   |||||||||||    
T  34659170 aaaaacacaagaaggtaaagttgaattgtgttggctttatgaaggtttctttttctttggtgttaataata-acctggtcagaatctcttgttgcagatt 34659268  T
Q  214 ctgactcagagtctgaatgcag 235  Q
    || |||||||||||||||||||    
T  34659269 ctaactcagagtctgaatgcag 34659290  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 20395885 - 20395932
Alignment:
Q  194 agaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 241  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  20395885 agaatctgatgttgcagattctgactcagagtctgaaagcagcggaaa 20395932  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 20395566 - 20395613
Alignment:
Q  194 agaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 241  Q
    |||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  20395566 agaatctgatgttgcaggttctgactcagagtctgaaagcagcggaaa 20395613  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 20395206 - 20395259
Alignment:
Q  188 ctagtcagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 241  Q
    |||||||||||| ||||||| |||||| |||| |||||||||| ||||||||||    
T  20395206 ctagtcagaatctgatgttgtagattcggacttagagtctgaaagcagcggaaa 20395259  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 20396203 - 20396250
Alignment:
Q  194 agaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 241  Q
    |||||| ||||||||||||||||||||| |||||||| |||| |||||    
T  20396203 agaatctgatgttgcagattctgactcatagtctgaaagcagtggaaa 20396250  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 247
Target Start/End: Original strand, 18565166 - 18565307
Alignment:
Q  105 tgaaggtggaaaaaacacaagaagggaaattgaattttgttgtcattttaaaag-tttctttttctttagtgtttataaaatacctagtcagaatcggat 203  Q
    ||||||||  ||||||||||||||||   ||||||| ||||| | ||||  | | |||||||||||  |||||| || ||| |||||||||||||| |||    
T  18565166 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcctttttgacgatttctttttcta-agtgttcattaaa-acctagtcagaatctgat 18565263  T
Q  204 gttgcagattctgactcagagtctgaatgcagcggaaaacataa 247  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  18565264 gttgcagattctgactcagagtttgaatgcagcggataacataa 18565307  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 5825135 - 5825202
Alignment:
Q  172 agtgtttataaaatacctagtcagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 241  Q
    |||||||||||||  ||| ||||  ||| |||||||||||||||||||||||||||||||||| ||||||    
T  5825135 agtgtttataaaa--cctggtcaacatctgatgttgcagattctgactcagagtctgaatgcaacggaaa 5825202  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 39476562 - 39476610
Alignment:
Q  194 agaatcggatgttgcagattctgactcagagtctgaatgcagcggaaaa 242  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39476562 agaatctgatgttgcagattctgactcagagtctgaatgcagcggaaaa 39476610  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 19475061 - 19475016
Alignment:
Q  196 aatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 241  Q
    |||| |||||| || |||||||||||||||||||||||||||||||    
T  19475061 aatctgatgtttcatattctgactcagagtctgaatgcagcggaaa 19475016  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 9757347 - 9757307
Alignment:
Q  191 gtcagaatcggatgttgcagattctgactcagagtctgaat 231  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  9757347 gtcagaatctgatgttacagattctgactcagagtctgaat 9757307  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 18303659 - 18303722
Alignment:
Q  201 gatgttgcagattctgactcagagtctgaatgcagcggaaa-acataacagaaaaataaagagt 263  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||||| ||| |||||||||    
T  18303659 gatgttgcagattccgactcagagtctgaatgcaacggaaatacataacacaaagataaagagt 18303722  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 24886075 - 24886036
Alignment:
Q  202 atgttgcagattctgactcagagtctgaatgcagcggaaa 241  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  24886075 atgttgcagattctgactcggagtctgaatgcagcggaaa 24886036  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 12063464 - 12063386
Alignment:
Q  194 agaatcggatgttgcagattctgactcagagtctgaatgcag-cggaaaacataacagaaaaataaagagttagagaga 271  Q
    |||||| |||||||  |||||||| |||||||||||||||||  ||||  ||||||| ||||||||| ||| |||||||    
T  12063464 agaatctgatgttgtggattctgattcagagtctgaatgcagtgggaatgcataacacaaaaataaaaagtcagagaga 12063386  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 9823552 - 9823601
Alignment:
Q  186 acctagtcagaatcggatgt-tgcagattctgactcagagtctgaatgca 234  Q
    |||||||||||||| || || |||| ||||||||||||||||||||||||    
T  9823552 acctagtcagaatctgaggtatgcatattctgactcagagtctgaatgca 9823601  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 12046548 - 12046577
Alignment:
Q  206 tgcagattctgactcagagtctgaatgcag 235  Q
    ||||||||||||||||||||||||||||||    
T  12046548 tgcagattctgactcagagtctgaatgcag 12046577  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 10878686 - 10878612
Alignment:
Q  158 gtttctttttctttagtgtttataaaatacctagtcagaatcggatgttgcagattctgactcagagtctgaatgca 234  Q
    ||||||||||||  ||||||||||||| |||| ||||||||| ||||||  |||||||||||| |||||||||||||    
T  10878686 gtttctttttctg-agtgtttataaaa-acctggtcagaatctgatgttatagattctgactcggagtctgaatgca 10878612  T

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Target: scaffold0772 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 360 - 410
Alignment:
Q  186 acctagtcagaatcggatgttgcagattctgactcagagtctgaatgcagc 236  Q
    |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||    
T  360 acctagacagaatctgatgttgcaaattctgactcagagtctaaatgcagc 410  T

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Target: scaffold0578 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 5915 - 5870
Alignment:
Q  196 aatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 241  Q
    |||| |||||| || |||||||||||||||||||||||||||||||    
T  5915 aatctgatgtttcatattctgactcagagtctgaatgcagcggaaa 5870  T

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Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 78640 - 78689
Alignment:
Q  193 cagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaaa 242  Q
    ||||||| ||||||||||||| ||||| |||||||||||||| |||||||    
T  78640 cagaatctgatgttgcagattatgacttagagtctgaatgcaacggaaaa 78689  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 24216894 - 24216861
Alignment:
Q  206 tgcagattctgactcagagtctgaatgcagcgga 239  Q
    ||||||||||||||||||||||||||||||||||    
T  24216894 tgcagattctgactcagagtctgaatgcagcgga 24216861  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 21822846 - 21822946
Alignment:
Q  172 agtgtttataaaatacctagtcagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa-acataacagaaaaat-aaagagttagaga 269  Q
    ||||||||||| | |||||  ||||||  |||| ||| ||||||||||||| | |||||||||||||||| ||| |||||||| || ||||||| |||||    
T  21822846 agtgtttataaga-acctaaccagaatttgatgctgctgattctgactcagggcctgaatgcagcggaaatacaaaacagaaagataaaagagtcagaga 21822944  T
Q  270 ga 271  Q
    ||    
T  21822945 ga 21822946  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 20052633 - 20052668
Alignment:
Q  193 cagaatcggatgttgcagattctgactcagagtctg 228  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20052633 cagaatctgatgttgcagattctgactcagagtctg 20052668  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 10984233 - 10984185
Alignment:
Q  193 cagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 241  Q
    ||||||| ||||||||||||||| ||||  |||||||||||| ||||||    
T  10984233 cagaatctgatgttgcagattcttactctaagtctgaatgcaacggaaa 10984185  T

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