View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_43 (Length: 304)
Name: NF8241_low_43
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 39072308 - 39072048
Alignment:
| Q |
1 |
taaatccaatggtagatattgaatggcatattacttaatgttgtttttaaggataataggcagattgcatattcaagcatgtcaatgttagtgattaatt |
100 |
Q |
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| T |
39072308 |
taaatccaatggtagatattgaatggcatattacttaatgttgtttttaaggataataggcagattgcatattcaagcatgtcaatgttactgattaatt |
39072209 |
T |
|
| Q |
101 |
aggtatgttgctgtagacaccgttacctctaattggatttccctttgtattgcagatgaattggaaactaattgacaggacttttatgccactgttgtta |
200 |
Q |
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| T |
39072208 |
aggtatgttgctgtagacaccgttacctctaattggatttccctttgtattgcagatgaattggaaactaattgacaggacttttatgccactgttgtta |
39072109 |
T |
|
| Q |
201 |
caagacaaatcccacagttatgaaattgctatctgtttcatggctttgaaaatgtaatgtg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39072108 |
caagacaaatcccacagttatgaaattgctatctgtttcatggctttgaaaatgtaatgtg |
39072048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 39072029 - 39071996
Alignment:
| Q |
260 |
tgaaagtgtatgtttcatccgttaagaatttcat |
293 |
Q |
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| T |
39072029 |
tgaaagtgtatgtttcatccgttaagaatttcat |
39071996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 23822737 - 23822843
Alignment:
| Q |
149 |
attgcagatgaattggaaactaattgacaggacttttatgccactgttgttacaagacaaatcccacagt-tatgaaattgctatctgtttcatggcttt |
247 |
Q |
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| T |
23822737 |
attgcaggtgaattggaaactaattaacaggactttcatgctattgttgttacaagacagttcccacaatatatgtatttgcaatctgtttcatggtatt |
23822836 |
T |
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| Q |
248 |
gaaaatg |
254 |
Q |
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| T |
23822837 |
gaaaatg |
23822843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 40170890 - 40170784
Alignment:
| Q |
149 |
attgcagatgaattggaaactaattgacaggacttttatgccactgttgttacaagacaaatcccacagt-tatgaaattgctatctgtttcatggcttt |
247 |
Q |
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||||||| ||||||||||||||||| |||||||||| |||| | ||||||||||||||| ||||||| | |||| | ||| ||||||||||||| || |
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| T |
40170890 |
attgcaggtgaattggaaactaattaacaggactttcatgctattgttgttacaagacagttcccacaatatatgtatttgtaatctgtttcatggtatt |
40170791 |
T |
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| Q |
248 |
gaaaatg |
254 |
Q |
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||||||| |
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| T |
40170790 |
gaaaatg |
40170784 |
T |
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