View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8241_low_44 (Length: 304)

Name: NF8241_low_44
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8241_low_44
NF8241_low_44
[»] chr8 (5 HSPs)
chr8 (4-288)||(6001422-6001692)
chr8 (6-85)||(17959897-17959976)
chr8 (4-95)||(21593183-21593274)
chr8 (4-95)||(10568287-10568378)
chr8 (16-95)||(17274722-17274801)
[»] chr5 (2 HSPs)
chr5 (4-95)||(19068681-19068772)
chr5 (4-95)||(5781067-5781158)
[»] chr6 (3 HSPs)
chr6 (4-95)||(32569830-32569921)
chr6 (4-95)||(3056937-3057028)
chr6 (4-95)||(14982390-14982478)
[»] chr2 (4 HSPs)
chr2 (4-95)||(36802252-36802343)
chr2 (4-95)||(12102809-12102900)
chr2 (4-95)||(29216603-29216694)
chr2 (4-95)||(29329902-29329993)
[»] chr7 (3 HSPs)
chr7 (5-95)||(14073790-14073879)
chr7 (5-95)||(14383818-14383907)
chr7 (16-95)||(3399538-3399617)
[»] chr4 (2 HSPs)
chr4 (4-95)||(8667085-8667175)
chr4 (4-77)||(4936025-4936098)
[»] chr1 (1 HSPs)
chr1 (4-95)||(20808743-20808834)
[»] scaffold0886 (1 HSPs)
scaffold0886 (4-76)||(2782-2854)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 4 - 288
Target Start/End: Original strand, 6001422 - 6001692
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgcttnnnnnnnn 103  Q
    |||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||  ||||||| ||||||||             
T  6001422 gagtttggcggtataggatgaaggtttctcgcggtgtcaacctagttggaatgtcgatgttgcctcttaatgtttgtcctctctccttgct--------- 6001512  T
Q  104 nnnnttgatgctcaaaaattg---aattgctttcattcatcacgtgacatgagtttttctataaatagacttatatttgaggcaaaataacaaacggaat 200  Q
            ||   ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6001513 --------tgaaaaaaaattgttgaattgctttcattcatcacgtgacatgagtttttctataaatagacttatatttgaggcaaaataacaaacggaat 6001604  T
Q  201 ttatggttccttatgattcaaaactctactgaaattatttctaaatgtctcttcttttctctagtgctacaaaatattggggtaaact 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6001605 ttatggttccttatgattcaaaactctactgaaattatttctaaatgtctcttcttttctctagtgctacaaaatattggggtaaact 6001692  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 17959976 - 17959897
Alignment:
Q  6 gtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctct 85  Q
    |||||| |||||||||||||||||||||  |||| | || ||||||| |||||||||||||||||||||| | |||||||    
T  17959976 gtttggcggtataggatgaaggtttctcgtggtgcctacctagttaggatgtcgatgttgcctcttaatgcctgtcctct 17959897  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 21593183 - 21593274
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || ||||||||||||| ||||  |||| |||| ||||| ||||||||||| |||||||| ||| | ||||||| |||||||||    
T  21593183 gagtttggcggcataggatgaaggtctctcggggtgccaacctagttggaatgtcgatgatgcctcttgatgcctgtcctctctccttgctt 21593274  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 10568378 - 10568287
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || |||||||| | |||||||  |||| |||| ||||| | | |||||||||||||||| ||||| ||||||| |||||||||    
T  10568378 gagtttggcggcataggatggaagtttctcggggtgccaacctagttggtaagtcgatgttgcctcttgatgtctgtcctctctccttgctt 10568287  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 17274722 - 17274801
Alignment:
Q  16 ataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || |||||||||||| ||||  |||| | |||||||||||||||||| ||||| ||||  | |||||||||    
T  17274722 ataggatggagatttctcacggtgccaaccaagttgggatgtcgatgttgcctcttgatgtctgtccattctccttgctt 17274801  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 19068772 - 19068681
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || |||||||| |||||||||| |||| |||| ||||| | |||||||||||||||||||||||| ||||||| || ||||||    
T  19068772 gagtttggcggcataggatggaggtttctcagggtgccaacctagtttggatgtcgatgttgcctcttaatgtctgtcctctctcattgctt 19068681  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 5781158 - 5781067
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    ||||||||||| |||||||| | |||||||  | || |||| ||||| | |||||||||||||||||||||||| ||||||  |||||||||    
T  5781158 gagtttggtggcataggatggaagtttctcgggatgccaacctagttgggatgtcgatgttgcctcttaatgtctgtcctccctccttgctt 5781067  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 32569830 - 32569921
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || |||||||  |||||||||  ||||||||  ||||| | |||||||||||||||||||||| | ||||||| |||||||||    
T  32569830 gagtttggcggcataggatagaggtttctcgaggtgtcaatctagttgggatgtcgatgttgcctcttaatgactgtcctctctccttgctt 32569921  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 3056937 - 3057028
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || |||||||| |||||||||  |||  |||||||||| | |||||||||||| ||||| ||| | |||| || |||||||||    
T  3056937 gagtttggcggcataggatggaggtttctcggggtaccaacttagttgggatgtcgatgttgtctcttgatgcctgtccactctccttgctt 3057028  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 14982390 - 14982478
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || |||||||| | |||||||  |||||||||  |||| | |||||||||||||||||   |||| ||||||| |||||||||    
T  14982390 gagtttggcggcataggatggaagtttctcgaggtgtcaaccaagttgggatgtcgatgttgcctct---tgtctgtcctctctccttgctt 14982478  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 36802343 - 36802252
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || |||||||| |||||||||  |||| |||| |||||   |||||||||||||||||||||  | ||||||| |||||||||    
T  36802343 gagtttggcggcataggatggaggtttctcggggtgccaacctagttgagatgtcgatgttgcctcttaatacccgtcctctctccttgctt 36802252  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 12102809 - 12102900
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || ||||||||||| ||||||  | |  |||| ||||| | |||||||||||||||||| ||||  ||||||| |||||||||    
T  12102809 gagtttggcggcataggatgaagatttctcgggataccaacatagttgggatgtcgatgttgcctcttgatgtatgtcctctctccttgctt 12102900  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 29216603 - 29216694
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| ||||||||||| |||| ||||  |||| ||||||| || | ||||||||| |||||||| |||   ||||||| |||||||||    
T  29216603 gagtttggcggtataggatggaggtctctctaggtgccaacttaattgggatgtcgatgatgcctcttgatgcatgtcctctctccttgctt 29216694  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 29329902 - 29329993
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| ||||||||||| |||| ||||  |||| ||||||| || | ||||||||| |||||||| |||   ||||||| |||||||||    
T  29329902 gagtttggcggtataggatggaggtctctctaggtgccaacttaattgggatgtcgatgatgcctcttgatgcatgtcctctctccttgctt 29329993  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 14073790 - 14073879
Alignment:
Q  5 agtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    ||||||| || |||||||| |||||||||| |||| |||| ||||| | | |||||||||||||||| ||| | ||||||| |||||||||    
T  14073790 agtttggcggcataggatggaggtttctcagggtgccaacctagttggtaagtcgatgttgcctcttgatg-ctgtcctctctccttgctt 14073879  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 14383818 - 14383907
Alignment:
Q  5 agtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    ||||||| || |||||||| |||||||||| |||| |||| ||||| | | |||||||||||||||| ||| | ||||||| |||||||||    
T  14383818 agtttggcggcataggatggaggtttctcagggtgccaacctagttggtaagtcgatgttgcctcttgatg-ctgtcctctctccttgctt 14383907  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 3399617 - 3399538
Alignment:
Q  16 ataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    ||||||||||||||||||  |||| |||| ||||| | | ||||||||||||| || |||||  |||||| |||||||||    
T  3399617 ataggatgaaggtttctcggggtgccaacctagttggtaagtcgatgttgccttttgatgtctatcctctctccttgctt 3399538  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 8667175 - 8667085
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || |||||||| |||||||||  |||  |||| ||||||| |||||||||||||||||| ||| | |||| || |||||||||    
T  8667175 gagtttggcggcataggatggaggtttctcggggtc-caacctagttaggatgtcgatgttgcctcttgatgcctgtccactctccttgctt 8667085  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 4936025 - 4936098
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtc 77  Q
    |||||||| ||| || |||||||||||| |  |||| |||||||||| | ||||||||||| |||||| |||||    
T  4936025 gagtttggcggtgtatgatgaaggtttcgcggggtgccaacttagttgggatgtcgatgtttcctcttgatgtc 4936098  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 20808834 - 20808743
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgtcagtcctctttccttgctt 95  Q
    |||||||| || |||||||| |||| | |||  |||||||||||||| | ||||||||| || ||||| ||| | ||||||| |||||||||    
T  20808834 gagtttggcggcataggatggaggtctatcaaagtgtcaacttagttgggatgtcgatgatgtctcttgatgcctgtcctctctccttgctt 20808743  T

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Target: scaffold0886 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 2782 - 2854
Alignment:
Q  4 gagtttggtggtataggatgaaggtttctcacggtgtcaacttagttagaatgtcgatgttgcctcttaatgt 76  Q
    |||||||| || |||||||| |||||||||  |||  |||| ||||| | |||||||||||||||||| ||||    
T  2782 gagtttggcggcataggatggaggtttctcgaggtaccaacctagttgggatgtcgatgttgcctcttgatgt 2854  T

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