View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_5 (Length: 536)
Name: NF8241_low_5
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Complemental strand, 17808571 - 17808067
Alignment:
| Q |
19 |
taggaagtaaaaagcacttaggtaaagtaaagagtagtttattttcgacatgaagcattcattagtcattacaactccagtagaagatttgtaatattct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17808571 |
taggaagtaaaaagcacttaggtaaagtaaagagtagtttattttcgacatgaagcattcattagtcattacaactccaatagaagatttgtaatattct |
17808472 |
T |
|
| Q |
119 |
gccataaagcataatttttgcattttattttctgcaaagcgtcggaaacatatcagtagacgcttgccaaagccgatttctacaggcctgcaatgaaggc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17808471 |
gccataaagcataatttttgcattttattttctgcaaagcgtcggaaacatatcagtagacgcttgccaaagccgatttctacaggcctgcgatgaaggc |
17808372 |
T |
|
| Q |
219 |
cactccggtgttcttcaaccaaacattaccttggatgagttgggccactgtaaacttgttcgcctcggcagtattgatgatatgataaccaggccatttc |
318 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17808371 |
cactccagtgttcttcaaccaaacattaccttggatgagttgggccactgtaaacttgttcgcctcggcagtattgatgatatgataaccaggccatttc |
17808272 |
T |
|
| Q |
319 |
actctcttgctggtaccagcaccgggtccgctgttcatatactctccgtaatacagtgtttggagaaagtccttgctcgcggcatcccattctgcccatc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17808271 |
actctcttgctggtaccagcaccgggtccgctgttcatgtactctccgtaatacagtgtttggagaaagtccttgctcgcggcatcccattctgcccatc |
17808172 |
T |
|
| Q |
419 |
ctgttgggtcaatgtgggctcctaacaaggactgcatcacaacagtcctggagtatttcttccatgggcggcctaagtaggttttgatggagcctatcac |
518 |
Q |
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| T |
17808171 |
ctgttgggtcaatgtgggctcctaacaaggactgcatcacaacagtcctggagtatttcttccatgggcggcctaagtaggttttgacggagcctatcac |
17808072 |
T |
|
| Q |
519 |
aggtt |
523 |
Q |
| |
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||||| |
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| T |
17808071 |
aggtt |
17808067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 107 - 513
Target Start/End: Complemental strand, 17777793 - 17777384
Alignment:
| Q |
107 |
ttgtaatattctgccataaagcataatttttgcattttattttctgcaaagcgtcggaaacatatcagtagacgcttgccaaagccgatttctacaggcc |
206 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||| ||||||| |||| |||||||||| ||| ||| ||| | || ||||||||||||| |
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| T |
17777793 |
ttgtaatatcctgccataaagcataatttttctgttttatttcctgcaaaacgtctgaaacatatcggtacacggttgttagagggcatttctacaggcc |
17777694 |
T |
|
| Q |
207 |
tgcaatgaaggccactccggtgttcttcaaccaaacattaccttggatgagttgggccactgtaaacttgttcgcctcggcagtattg---atgatatga |
303 |
Q |
| |
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| ||||||||||||| || |||||||||||||||||||| ||||||||||| || | |||||||||||| | ||||| |||| ||| ||||||||| |
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| T |
17777693 |
ttcaatgaaggccacccctgtgttcttcaaccaaacatttccttggatgagctgtgttactgtaaacttgcttgcctctgcagcattttttatgatatga |
17777594 |
T |
|
| Q |
304 |
taaccaggccatttcactctcttgctggtaccagcaccgggtccgctgttcatatactctccgtaatacagtgtttggagaaagtccttgctcgcggcat |
403 |
Q |
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||||| ||||| |||||||||| | |||||||||||| | ||| || ||||| |||||||||||||||| |||||| ||||||||||| || ||||||| |
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| T |
17777593 |
taacctggccaagtcactctcttaccggtaccagcacctgctccactattcatgtactctccgtaatacaatgtttgcagaaagtccttactagcggcat |
17777494 |
T |
|
| Q |
404 |
cccattctgcccatcctgttgggtcaatgtgggctcctaacaaggactgcatcacaacagtcctggagtatttcttccatgggcggcctaagtaggtttt |
503 |
Q |
| |
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||||||| |||||||||| ||||||||||||| | | | | |||||||| |||||| |||||||||||||| |||||||||||||||| ||| ||||| |
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| T |
17777493 |
cccattcagcccatcctgctgggtcaatgtggccgtccacgacggactgcaacacaacggtcctggagtattttttccatgggcggcctaggtatgtttt |
17777394 |
T |
|
| Q |
504 |
gatggagcct |
513 |
Q |
| |
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|||||||||| |
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|
| T |
17777393 |
gatggagcct |
17777384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 214 - 514
Target Start/End: Complemental strand, 17822283 - 17821980
Alignment:
| Q |
214 |
aaggccactccggtgttcttcaaccaaacattaccttggatgagttgggccactgtaaacttgttcgcctcggcag---tattgatgatatgataaccag |
310 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| ||||| || || ||||||||| | ||||| |||| ||||||||| ||||||||| | |
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| T |
17822283 |
aaggccacccctgtgttcttcaaccaaacattaccttggattagttgtgctaccgtaaacttgctagcctctgcagcagtattgatgacatgataacctg |
17822184 |
T |
|
| Q |
311 |
gccatttcactctcttgctggtaccagcaccgggtccgctgttcatatactctccgtaatacagtgtttggagaaagtccttgctcgcggcatcccattc |
410 |
Q |
| |
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|||| ||||||||||| ||||||||||| ||||| |||||| ||||||||||| |||||||| || ||||||||||| |||||||||||||| || |
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| T |
17822183 |
gccaagtcactctcttggcagtaccagcacctggtccattgttcaagtactctccgtagtacagtgtctgcagaaagtccttactcgcggcatcccactc |
17822084 |
T |
|
| Q |
411 |
tgcccatcctgttgggtcaatgtgggctcctaacaaggactgcatcacaacagtcctggagtatttcttccatgggcggcctaagtaggttttgatggag |
510 |
Q |
| |
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||||||||||||||||| |||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||| |
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| T |
17822083 |
agcccatcctgttgggtcgatgtggctgtccagaaaggattgcatcacaacagtcctggagtatttcttccatgggcggccgaggaaagttttgatggag |
17821984 |
T |
|
| Q |
511 |
ccta |
514 |
Q |
| |
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|||| |
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| T |
17821983 |
ccta |
17821980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 17811003 - 17810950
Alignment:
| Q |
29 |
aaagcacttaggtaaagtaaagagtagtttattttcgacatgaagcattcatta |
82 |
Q |
| |
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||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |
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| T |
17811003 |
aaagcacttaggttaagtaaagacaagtttattttcgatatgaagcattcatta |
17810950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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