View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_52 (Length: 279)
Name: NF8241_low_52
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_52 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 595447 - 595719
Alignment:
| Q |
7 |
gagaagcagagacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgctcaaactaattttagt |
106 |
Q |
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| T |
595447 |
gagaaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgttcaaactaattttagt |
595546 |
T |
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| Q |
107 |
actattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtctactt |
206 |
Q |
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| T |
595547 |
actattttaccaatcatagcaaaaatggattactgtcttgattgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtctactt |
595646 |
T |
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| Q |
207 |
tagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgca |
279 |
Q |
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| T |
595647 |
tagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgca |
595719 |
T |
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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 4590038 - 4590129
Alignment:
| Q |
112 |
tttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtcta |
203 |
Q |
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| T |
4590038 |
tttaccaatcatagcagaaataaattcctgtcctgaatgctttacttgtttttagtttgttgacagaccagggagaattcgagagtcgtcta |
4590129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 4603679 - 4603770
Alignment:
| Q |
109 |
tattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgt |
200 |
Q |
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| T |
4603679 |
tattttaccaatcatagcagaattaaattactatcctgaatgctttacttgtttttaatttgtcgacaggtcagtgagaattcgagaatcgt |
4603770 |
T |
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