View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_54 (Length: 278)
Name: NF8241_low_54
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 13659971 - 13659730
Alignment:
| Q |
20 |
tggcaatggaagaagaataaaaatgtatacattctttaacatggtcaattattattaatctctacaattccttatgatctcatccgactcaatagattta |
119 |
Q |
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| T |
13659971 |
tggcaatggaagaagaaaaaaaatgtatacattctttaacatggccaattattattaatctctacaattccttatgatcccacccgactcaatagattta |
13659872 |
T |
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| Q |
120 |
cctttgcaattccagaatacccaattcacatcaattgaaggcttttaaaagattttctacgacaaaagttatttatggcataaaaggacaaaaatgaaat |
219 |
Q |
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| T |
13659871 |
cctttgcaattccagaatatccaattcacatcaattgaaggattttaaaagattttttacgacaaaagttatttatggcataaaaggacaaaaatgaaat |
13659772 |
T |
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| Q |
220 |
aacaatactcaatcacaaaactccatactatagcacgaaact |
261 |
Q |
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| T |
13659771 |
aacaatactaaatcacaaaactccatactatagcacgaaact |
13659730 |
T |
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