View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_55 (Length: 277)
Name: NF8241_low_55
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 46735767 - 46736003
Alignment:
| Q |
1 |
ttggaactctatttcaataatttgctttaatcttggcgttaaactatgtgcaggttataaatggtaagccttacaacagaagctgtgatgtctacagctt |
100 |
Q |
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| T |
46735767 |
ttggaactctagttcaataatttgctttaatcttggcgttaaactatgtgcaggttatatgtggtaagccttacaacagaagctgtgatgtctacagctt |
46735866 |
T |
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| Q |
101 |
tggcatttgcttgtgggaaatttactgttgcgacatgccttatatgaatctaagctttgctgatgcgtcagctgcggttgctgataaggtcagtttatac |
200 |
Q |
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| T |
46735867 |
tggcatttgcttgtgggaaatttactgctgcgacatgccttatatgaatctaagctttgctgatgcgtcagctgcggttgctgataaggtcagtttatac |
46735966 |
T |
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| Q |
201 |
aatgaaccatgaactctttctatctaccctcatattc |
237 |
Q |
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| T |
46735967 |
aatgaaccatgaactctttctatctaccctcatattc |
46736003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19409671 - 19409586
Alignment:
| Q |
1 |
ttggaactctatttcaataatttgctttaatcttggcgttaaactatgtgcaggttataaatggtaagccttacaacagaagctgt |
86 |
Q |
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| T |
19409671 |
ttggaacactatttcaataatttgcttgaaacttggcgttaaaatatgtgcaggttataaatagtaggccttacaacagaagctgt |
19409586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 19409584 - 19409532
Alignment:
| Q |
184 |
ataaggtcagtttatacaatgaaccatgaactctttctatctaccctcatatt |
236 |
Q |
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| T |
19409584 |
ataaggtctgtttacacaatgaaccatgaactctttctatctatgctcatatt |
19409532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 985860 - 985964
Alignment:
| Q |
61 |
atggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgtgggaaatttactgttgcgacatgccttatatgaatctaagctttgc |
160 |
Q |
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||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||| || || || ||||||||| ||||||||||||| |
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| T |
985860 |
atggtaaaccttacaacaggacatgtgatgtatacagctttggcatttgcttgtgggaaatttattgctgtgatatgccttatccagatctaagctttgc |
985959 |
T |
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| Q |
161 |
tgatg |
165 |
Q |
| |
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||||| |
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| T |
985960 |
tgatg |
985964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 20428590 - 20428621
Alignment:
| Q |
205 |
aaccatgaactctttctatctaccctcatatt |
236 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
20428590 |
aaccatgaactctttctatctaccctcatatt |
20428621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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