View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_56 (Length: 273)
Name: NF8241_low_56
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 12607341 - 12607594
Alignment:
| Q |
1 |
gtagagttccttaaaatttgtattagtgctttatgaaaacaagcaagcaaacaccatttattggtgcacgtggtaggcaccatttgcctgagtttctcaa |
100 |
Q |
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| T |
12607341 |
gtagagttccttaaaatttgtattagtgctttatgaaaacaagcaagcaaacaccatttattggtgcacgtggtaggcaccatttgcctgagtttctcaa |
12607440 |
T |
|
| Q |
101 |
ttgcttgttccctcttaactctaatttcttctgcttcttgcttggtggggggttcaattcgcttttcgtacgccaaggtcataataattgacaactaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12607441 |
ttgcttgttccctcttaactctaatttcttctgcttctggcttggtggggggttcaattcgcttttcgtacgccaaggtcataataattgacaactaagc |
12607540 |
T |
|
| Q |
201 |
aaattattgtaatttagtttgtactatatttgatgatttatttgttaaagttat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12607541 |
aaattattgtaatttagtttgtactatatttgatgatttatttgttaaagttat |
12607594 |
T |
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