View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_58 (Length: 261)
Name: NF8241_low_58
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 49 - 250
Target Start/End: Original strand, 41459280 - 41459481
Alignment:
| Q |
49 |
taaatttaagagattatttggataacatgtctgatacatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaaggga |
148 |
Q |
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| T |
41459280 |
taaatttaagagattatttggataacatgtctgatacatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaaggga |
41459379 |
T |
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| Q |
149 |
tggttcaacaggtgacaaaagtcacatcttcaccaacacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttc |
248 |
Q |
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| T |
41459380 |
tggtccaacaggtgacaaaagtcacatcttcaccaacacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttc |
41459479 |
T |
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| Q |
249 |
at |
250 |
Q |
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|| |
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| T |
41459480 |
at |
41459481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 241
Target Start/End: Original strand, 41442496 - 41442679
Alignment:
| Q |
55 |
taagagattatttggataacatgtctgatacatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaagggatggttc |
154 |
Q |
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| T |
41442496 |
taagagattattcggaaaacatggttgaaatacatttcttgatttgattgcaggattataatgcaaagctttctgatttcgggctggcaaaggatggtcc |
41442595 |
T |
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| Q |
155 |
aacaggtgacaaaagtcacatcttcaccaacacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtatttt |
241 |
Q |
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| T |
41442596 |
aacaggtgacaaaagccacgtct---ccaccagggtaatgggaacctatggatatgcagctcctgaatatctagctacaggtatttt |
41442679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 41448870 - 41448902
Alignment:
| Q |
17 |
atgtagaattgtagacttttagtcttttgcttt |
49 |
Q |
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| T |
41448870 |
atgtagaattgtagacttttagtcttttgcttt |
41448902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 41459219 - 41459251
Alignment:
| Q |
17 |
atgtagaattgtagacttttagtcttttgcttt |
49 |
Q |
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| T |
41459219 |
atgtagaattgtagacttttagtcttttgcttt |
41459251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 41448986 - 41449032
Alignment:
| Q |
137 |
gctggcaagggatggttcaacaggtgacaaaagtcacatcttcacca |
183 |
Q |
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| T |
41448986 |
gctggcaagggatggtccaacaggtgagaaaagtcacgtctccacca |
41449032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 41448931 - 41448987
Alignment:
| Q |
49 |
taaatttaagagattatttggataacatgtctgatacatattcctgtatttggttgc |
105 |
Q |
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| T |
41448931 |
taaatgtaagagattatttaattaacatgtatgatacatatttctggatttggttgc |
41448987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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