View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_6 (Length: 521)
Name: NF8241_low_6
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Original strand, 34097081 - 34097561
Alignment:
| Q |
19 |
cttttatggcataattctttcaattgcaatgttgtagattattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtatttatcatttc |
118 |
Q |
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| T |
34097081 |
cttttatggtataattctttcaattgcaatgttgtagattattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtgtttatcgtttc |
34097180 |
T |
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| Q |
119 |
atagggtactacggttatcctagtgaaagttgaaagcgggattcatggaactttatttgtgatttttcgcaaaatatttctatttcgtggtgcatcatta |
218 |
Q |
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| T |
34097181 |
atagggtactacggttatcctagtgaaagttgaaagcgggattcatggaactttatttgtgatttctcgcaaaatatttatatttcgtggtgcatcatta |
34097280 |
T |
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| Q |
219 |
gggattttaatgatatattggatgctcatgaggaaaaaaggaagaattaagaggcctaattggtttattaacgaattaagacaggcggtattagattatg |
318 |
Q |
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| T |
34097281 |
gggattttaatgatatattggatgctcatgaggaaaaaaggaagaattaagaggcctaattggtttattaacgaattaagacatgcgatattagattatg |
34097380 |
T |
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| Q |
319 |
ggttgtagttatatgtccaaatggaaggaaggctaccattttacctggtttcaaagtccaggcaac-cactccttgtgttttttagaagagattagagac |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
34097381 |
ggtt---gttatatgtccaaatggaaggaaggctaccattttacctggtttcaaagtccaggcaacattctccttgtgttttttagaagagatt--agac |
34097475 |
T |
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| Q |
418 |
tatgctcttactagtgaaatgtggtttcaaattttttccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgat |
503 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097476 |
tatgctcttagtagtgaaatgtggtttcaaatttttcccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgat |
34097561 |
T |
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