View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8241_low_60 (Length: 259)
Name: NF8241_low_60
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_60 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 35972403 - 35972645
Alignment:
| Q |
1 |
tatgactacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35972403 |
tatgactacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaa |
35972502 |
T |
|
| Q |
101 |
caggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttcagtttatttttctttcattcataagaatcacaaacaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35972503 |
caggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcattcagtttttttttctttcattcataagaatcacaaacaact |
35972602 |
T |
|
| Q |
201 |
ttggcctctattattacgttgcctcgtcggtgccgaacaccaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35972603 |
ttggcctctattattacgttgcctcgtcggtgccgaacaccaa |
35972645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 35952454 - 35952654
Alignment:
| Q |
5 |
actacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacagg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
35952454 |
actatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaaggcatctagatccaaaaaacaag |
35952553 |
T |
|
| Q |
105 |
cagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttcagtttatttttctttcattcataagaatcacaaacaactttgg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35952554 |
cagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatttttctttcattcataagaatcagaaacaactttgg |
35952653 |
T |
|
| Q |
205 |
c |
205 |
Q |
| |
|
| |
|
|
| T |
35952654 |
c |
35952654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 35979567 - 35979742
Alignment:
| Q |
15 |
ctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagatattga |
114 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||| |||||||| ||| || |||||||||| ||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
35979567 |
ctggtcctcctcatatgccaacttttttctcaactgttgaagtagaaggcgtggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatga |
35979666 |
T |
|
| Q |
115 |
tgctgcaaagattgcttacattgccttaaaagagtgtaagttcgttcagtttatttttctttcattcataagaatc |
190 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| |||| || ||||| ||||||| |||||||||| |
|
|
| T |
35979667 |
tgctgcaaagattgcttacaaggccttaaaagatggtaagtttattcacttgattttgctttcatgcataagaatc |
35979742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 35956512 - 35956658
Alignment:
| Q |
16 |
tggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagatattgat |
115 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||||||||||||||| | ||||||||| |||||||||| ||||||||| ||||||| ||| |
|
|
| T |
35956512 |
tggtcctcctcatatgccaacttttttctcaactgtggaagtagagggcatcggatttcatggaaaggcatctaaatccaaaaacaaggcagaagaagat |
35956611 |
T |
|
| Q |
116 |
gctgcaaagattgcttacattgccttaaaagagtgtaagttcgttca |
162 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
35956612 |
gccgcaaagattgcttacatcaccttaaaagagtgtaagttcattca |
35956658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 35969443 - 35969585
Alignment:
| Q |
5 |
actacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacagg |
104 |
Q |
| |
|
|||||| || ||||||| | |||||||||||||| || |||| |||| ||||||||||| || | |||||||| || |||||||||||||||||| ||| |
|
|
| T |
35969443 |
actacacagactggttcccttcatatgccaacttttttctcagctgttgaagtagagggtgtggagtttcatggaaatgcatctagatccaaaaaagagg |
35969542 |
T |
|
| Q |
105 |
cagatattgatgctgcaaagattgcttacattgccttaaaaga |
147 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
35969543 |
cagaacgtgatgctgcaaagattgcttacaaggccataaaaga |
35969585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 35974469 - 35974542
Alignment:
| Q |
84 |
catctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttc |
157 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35974469 |
catctagatccataaaagaggcagaacatgatgctgaaaagattgcttacattaccttaaaagagtgtaagttc |
35974542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University