View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_61 (Length: 255)
Name: NF8241_low_61
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 37367827 - 37368058
Alignment:
| Q |
5 |
gaaccagatccaacacgctgagaataacgacctgctttgaggaagcgagcgatgcggccgacggggaactggagaccggctttgcttgatcttgaaacgg |
104 |
Q |
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| T |
37367827 |
gaaccagatccaacacgctgagaataacgacctgctttgaggaagcgagcgatgcggccgacggggaactggagaccggctttgcttgatctggaaacgg |
37367926 |
T |
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| Q |
105 |
acttggtggttttgggtttgccccttccacctttcttggttgttgcagttgcatctgaagccattgtttctttcttgtttgaacttgaatttgcagagaa |
204 |
Q |
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| T |
37367927 |
acttggtggttatgggtttgccccttccacctttcttggttgttgcagttgcatctgaagccattgttactttcttgtttgaacttgaatttgcagagaa |
37368026 |
T |
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| Q |
205 |
gatgaaagagtttgagttgtgaagtttaattg |
236 |
Q |
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| T |
37368027 |
gatgaaagagtttgagttgttaagtttaattg |
37368058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 39545937 - 39545726
Alignment:
| Q |
13 |
tccaacacgctgagaataacgacctgctttgaggaagcgagcgatgcggccgacggggaactggagaccggctttgcttgatcttgaaacggacttggtg |
112 |
Q |
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| T |
39545937 |
tccaacacgttgagaataacgacctgctttgaggaagcgaacgatgcggccaacggggaactggagatcagctttgcttgatctggaaacggacttggtg |
39545838 |
T |
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| Q |
113 |
gttttgggtttgccccttccacctttcttggttgttgcagttgcatctgaagccattgtttctttcttgtttgaacttgaatttgcagagaagatgaaag |
212 |
Q |
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| T |
39545837 |
gtttcgggtttgccccttccacttttcttggttgttgtagttgcatctcaagccattgaacctttcttggttgaaattgaatttgcagagaagatgaaag |
39545738 |
T |
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| Q |
213 |
agtttgagttgt |
224 |
Q |
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| T |
39545737 |
agtttgagttgt |
39545726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 32890401 - 32890360
Alignment:
| Q |
172 |
ttctttcttgtttgaacttgaatttgcagagaagatgaaaga |
213 |
Q |
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| T |
32890401 |
ttctttcttgtttgaacttgaatttgcagagaagatgaaaga |
32890360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 26448211 - 26448170
Alignment:
| Q |
189 |
ttgaatttgcagagaagatgaaagagtttgagttgtgaagtt |
230 |
Q |
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| T |
26448211 |
ttgaatttgcagagaggatgaaagagtttaagttgtgaagtt |
26448170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 34614941 - 34614889
Alignment:
| Q |
38 |
gctttgaggaagcgagcgatgcggccgacggggaactggagaccggctttgct |
90 |
Q |
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| T |
34614941 |
gctttgaggaaacgagcgatacggccaacggggaactggagacccgccttgct |
34614889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 34622428 - 34622376
Alignment:
| Q |
38 |
gctttgaggaagcgagcgatgcggccgacggggaactggagaccggctttgct |
90 |
Q |
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| T |
34622428 |
gctttgaggaaacgagcgatacggccaacggggaattgaagaccagctttgct |
34622376 |
T |
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