View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8241_low_65 (Length: 250)

Name: NF8241_low_65
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8241_low_65
NF8241_low_65
[»] chr2 (6 HSPs)
chr2 (10-226)||(7378359-7378578)
chr2 (124-226)||(45305965-45306068)
chr2 (117-217)||(33667323-33667424)
chr2 (104-212)||(43900541-43900650)
chr2 (117-226)||(1400774-1400885)
chr2 (104-212)||(28527310-28527418)
[»] chr1 (4 HSPs)
chr1 (104-212)||(29677072-29677181)
chr1 (104-226)||(29167797-29167920)
chr1 (106-212)||(42604231-42604338)
chr1 (107-226)||(34364230-34364350)
[»] chr7 (8 HSPs)
chr7 (104-226)||(22740646-22740769)
chr7 (126-212)||(20556779-20556866)
chr7 (104-224)||(31303453-31303575)
chr7 (104-212)||(21589636-21589745)
chr7 (143-213)||(32964774-32964844)
chr7 (104-212)||(4290840-4290948)
chr7 (126-215)||(27523496-27523586)
chr7 (104-212)||(18312840-18312948)
[»] chr5 (12 HSPs)
chr5 (117-226)||(35922730-35922841)
chr5 (142-212)||(7156105-7156175)
chr5 (112-200)||(30045873-30045962)
chr5 (104-226)||(22169455-22169579)
chr5 (171-226)||(36169388-36169444)
chr5 (104-174)||(15221615-15221686)
chr5 (104-212)||(13312611-13312720)
chr5 (160-212)||(31189591-31189643)
chr5 (125-212)||(33958988-33959076)
chr5 (142-210)||(42034771-42034839)
chr5 (124-193)||(19621480-19621550)
chr5 (103-212)||(43461687-43461797)
[»] chr3 (15 HSPs)
chr3 (124-224)||(4169112-4169214)
chr3 (106-226)||(42637945-42638067)
chr3 (104-226)||(1705657-1705781)
chr3 (104-226)||(31545614-31545738)
chr3 (142-213)||(27365015-27365086)
chr3 (104-212)||(5341889-5341998)
chr3 (117-224)||(42481300-42481409)
chr3 (106-212)||(26308629-26308736)
chr3 (142-213)||(27335409-27335480)
chr3 (151-213)||(27326063-27326125)
chr3 (151-213)||(27332300-27332362)
chr3 (117-211)||(19280212-19280306)
chr3 (104-225)||(3823650-3823774)
chr3 (176-212)||(11509916-11509952)
chr3 (126-217)||(13358101-13358193)
[»] chr8 (7 HSPs)
chr8 (104-212)||(5321949-5322058)
chr8 (117-226)||(38606828-38606939)
chr8 (147-213)||(32959572-32959638)
chr8 (117-212)||(15714695-15714791)
chr8 (142-212)||(29367081-29367151)
chr8 (118-212)||(26493338-26493432)
chr8 (107-212)||(1240891-1240996)
[»] chr6 (9 HSPs)
chr6 (126-226)||(33815025-33815127)
chr6 (117-212)||(138715-138811)
chr6 (117-212)||(146736-146832)
chr6 (118-212)||(3620761-3620856)
chr6 (105-212)||(10304688-10304796)
chr6 (160-226)||(22608358-22608425)
chr6 (154-212)||(2834975-2835033)
chr6 (142-226)||(3222429-3222514)
chr6 (104-171)||(2430594-2430662)
[»] chr4 (9 HSPs)
chr4 (142-226)||(16583594-16583679)
chr4 (104-226)||(1966820-1966943)
chr4 (142-213)||(24669196-24669267)
chr4 (142-226)||(9809072-9809157)
chr4 (144-212)||(35544448-35544515)
chr4 (160-226)||(17633385-17633452)
chr4 (142-226)||(9810758-9810843)
chr4 (154-226)||(33249654-33249727)
chr4 (176-212)||(19596795-19596831)
[»] scaffold0291 (1 HSPs)
scaffold0291 (142-213)||(5869-5940)
[»] scaffold1126 (1 HSPs)
scaffold1126 (154-226)||(247-320)
[»] scaffold0043 (1 HSPs)
scaffold0043 (142-213)||(87034-87105)
[»] scaffold0251 (1 HSPs)
scaffold0251 (119-200)||(10617-10699)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 7378359 - 7378578
Alignment:
Q  10 aagaagaagaaaaaccaaagttggtcagcttcaggcttcaaacat---gtatgcttagtggtgggtcaaaaggttcaaaacaattgttaattcaatcttt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7378359 aagaagaagaaaaaccaaagttggtcagcttcaggcttcaaacattatgtatgcttagtggtgggtcaaaaggttcaaaacaattgttaattcaatcttt 7378458  T
Q  107 tttaa-ttgtttgaccattattttttcagaatttaatggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagct 205  Q
    ||| | |||  |||| | |||||||| | |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  7378459 ttttagttgcgtgactactatttttttaaaatttaatggttaattaagtggaataatagtggtcacacacattttagttgcgtcaccatattttt-agct 7378557  T
Q  206 tctaaatgtggttacgcaact 226  Q
    |||||||||||||||||||||    
T  7378558 tctaaatgtggttacgcaact 7378578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 45306068 - 45305965
Alignment:
Q  124 tattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatgtggttacgc 222  Q
    |||||||| |||||||| | |||||| ||| ||||| |||||||||||| || |||||||||||||  ||| |||||||||||| |||||||||| ||||    
T  45306068 tatttttttagaatttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccacatttttcagcttttaaatgtggtcacgc 45305969  T
Q  223 aact 226  Q
    ||||    
T  45305968 aact 45305965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 33667424 - 33667323
Alignment:
Q  117 tgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatgtg 215  Q
    |||||| |||||||||||||| || | |||||| ||| ||||| ||||||||| || || |||||| |||||| |||| |||||||| ||||||||||||    
T  33667424 tgaccactattttttcagaatatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacatttttcaacttctaaatgtg 33667325  T
Q  216 gt 217  Q
    ||    
T  33667324 gt 33667323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 43900650 - 43900541
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    |||||||||||  |||||  ||||||||||||||||| | |||||| ||| | ||| ||||||||||||    ||||||||||||| |||| ||||||||    
T  43900650 ttttttaattgcgtgacccctattttttcagaatttatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttca 43900551  T
Q  203 gcttctaaat 212  Q
    ||||||||||    
T  43900550 gcttctaaat 43900541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 1400774 - 1400885
Alignment:
Q  117 tgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gt 214  Q
    |||||| ||||||| || |||||| | |||||| ||| ||||| ||||||| |||| |  ||||| |||| || |||| |||||||||||||||||| ||    
T  1400774 tgaccactatttttccataatttatttggttaactaagtggaaaaatagtgatcacgcgcatttttgttgtgtgaccacatttttcagcttctaaatagt 1400873  T
Q  215 ggttacgcaact 226  Q
    ||| ||||||||    
T  1400874 ggtcacgcaact 1400885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 28527310 - 28527418
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| ||||||| ||||||||| | |||||| ||| ||||| ||||||||||||||  || |||||| ||| || | ||||| ||    
T  28527310 ttttttagttgcgtgaccactatttttccagaatttatttggttaactaattggaaaaatagtggtcacacgcatgttagtt-cgtgacaacattttcca 28527408  T
Q  203 gcttctaaat 212  Q
    ||||||||||    
T  28527409 gcttctaaat 28527418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 29677072 - 29677181
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| ||||||||||||||||| | |||||| ||| ||||| |||||||||||| || ||||||||||||| |||| ||||||||    
T  29677072 ttttttagttgcatgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacatttttca 29677171  T
Q  203 gcttctaaat 212  Q
    ||||||||||    
T  29677172 gcttctaaat 29677181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 29167797 - 29167920
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| || |||||| ||||||| | |||||| ||| ||||| |||||||||||  |  |||||| |||||| ||||||||||| |    
T  29167797 ttttttagttgcctgaccactagtttttcggaatttatttggttaactaagtggaaaaatagtggtcatgcgcatttta-ttgcgtgaccatatttttta 29167895  T
Q  203 gcttctaaat-gtggttacgcaact 226  Q
    |||||||||| ||||| ||||||||    
T  29167896 gcttctaaatagtggtcacgcaact 29167920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 42604338 - 42604231
Alignment:
Q  106 ttttaattgtttgaccattattttttcagaatttaatg-gttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagc 204  Q
    ||||| |||| ||| || ||||||||||||||||| |  ||||| ||| ||||| |||||||||||| |  ||||||||||  | |||||| |||| |||    
T  42604338 ttttagttgtgtgatcactattttttcagaatttatttcgttaactaagtggaaaaatagtggtcacgcgcattttagttgtatgaccatacttttaagc 42604239  T
Q  205 ttctaaat 212  Q
    ||||||||    
T  42604238 ttctaaat 42604231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 34364350 - 34364230
Alignment:
Q  107 tttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagct 205  Q
    |||| |||| |||||||||||||| ||||||||  | |||||| ||| || || ||| ||||||||    |||||||||| || |||| || ||||||||    
T  34364350 tttagttgtgtgaccattatttttccagaatttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccacatgtttcagct 34364251  T
Q  206 tctaaatgtggttacgcaact 226  Q
    ||||||| |||  ||||||||    
T  34364250 tctaaatatggccacgcaact 34364230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 22740646 - 22740769
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    |||||||||||  |||| | ||||||||||||||||| | |||||| ||| ||||| |||| || |||| |||||||||||||||| |||||||||||||    
T  22740646 ttttttaattgcgtgactactattttttcagaatttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccatatttttca 22740745  T
Q  203 gcttctaaatgtggttacgcaact 226  Q
    |||| ||||| |||| || |||||    
T  22740746 gcttttaaatatggtcacacaact 22740769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 20556866 - 20556779
Alignment:
Q  126 ttttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    ||||||||||||||| | |||||| ||| ||||| |||| ||||||| | |||||||||||||| |||| ||||||||||||||||||    
T  20556866 ttttttcagaatttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacatttttcagcttctaaat 20556779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 31303575 - 31303453
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| ||| ||| ||||||||| | |||||| ||| ||||| |||||||||||| || ||||||||||| | |||| ||||||||    
T  31303575 ttttttagttgcgtgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacatttttca 31303476  T
Q  203 gcttctaaat-gtggttacgcaa 224  Q
    |||||||||| ||||| ||||||    
T  31303475 gcttctaaatagtggtcacgcaa 31303453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 21589745 - 21589636
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaatgg-ttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| ||||||| ||||| ||| | | |||||||| ||||| ||||||||||||||  ||||||||||| | |||| ||||||||    
T  21589745 ttttttagttgcatgaccactatttttccagaacttatttgattaattaagtggaaaaatagtggtcacacgcattttagttgcatgaccacatttttca 21589646  T
Q  203 gcttctaaat 212  Q
    ||||||||||    
T  21589645 gcttctaaat 21589636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 32964844 - 32964774
Alignment:
Q  143 ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatg 213  Q
    |||||||||| ||||| ||||||||||||    ||||||||| | | ||||||||||||||||||||||||    
T  32964844 ggttaattaagtggaaaaatagtggtcacgtgcattttagttacatgaccatatttttcagcttctaaatg 32964774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 4290948 - 4290840
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| || |||||||||||||| | |||||| ||| ||||| |||||||||||| || |  |||||||||| |||| ||||||||    
T  4290948 ttttttagttgcgtgaccactagtttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcaca-cttagttgcgtgaccacatttttca 4290850  T
Q  203 gcttctaaat 212  Q
     |||||||||    
T  4290849 acttctaaat 4290840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 27523496 - 27523586
Alignment:
Q  126 ttttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatgtg 215  Q
    ||||||||||||||| | |||||||||| ||||| |||||| ||||  || |||||| |||  | ||||| |||||||| |||||||||||    
T  27523496 ttttttcagaatttatttggttaattaagtggaaaaatagtagtcaagcacattttaattgtatgaccatgtttttcagtttctaaatgtg 27523586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 18312948 - 18312840
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| |||||||  |||||||| | |||||| ||| ||||| |||||||||||||   ||||||||||||| | || | ||||||    
T  18312948 ttttttagttgcgtgaccactatttttcaagaatttattaggttaactaagtggaaaaatagtggtcacatgcattttagttgcgtgagcaca-ttttca 18312850  T
Q  203 gcttctaaat 212  Q
    ||||||||||    
T  18312849 gcttctaaat 18312840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 35922841 - 35922730
Alignment:
Q  117 tgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gt 214  Q
    |||||| ||||||||||||||||| | |||||| ||| ||||| ||||||||||| ||  ||||||||||||| |||| |||||||||||||||||| ||    
T  35922841 tgaccactattttttcagaatttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccacatttttcagcttctaaatagt 35922742  T
Q  215 ggttacgcaact 226  Q
    ||| ||||||||    
T  35922741 ggtcacgcaact 35922730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 7156175 - 7156105
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||||||  | || ||||||||||||||||||    
T  7156175 tggttaattaagtggaaaaataatggtcacgcatattttagttgcgcgatcacatttttcagcttctaaat 7156105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 30045962 - 30045873
Alignment:
Q  112 ttgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatattttt 200  Q
    |||| |||||||||||||  | ||||||| | |||||||||| ||||| |||||||||||| | ||||||||||||||||  ||||||||    
T  30045962 ttgtgtgaccattattttcaccgaatttatttggttaattaaatggaaaaatagtggtcacgcgtattttagttgcgtcattatattttt 30045873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 22169579 - 22169455
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  ||||||||||||||||| |||||| | |||||| ||  | ||| |||||||||||| |  ||||||||||||| |||| ||||||||    
T  22169579 ttttttagttgcgtgaccattattttttcaaaatttatttggttaactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttca 22169480  T
Q  203 gcttctaaat-gtggttacgcaact 226  Q
     ||| ||||| ||||| ||||||||    
T  22169479 acttataaatagtggtcacgcaact 22169455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 36169388 - 36169444
Alignment:
Q  171 cacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacgcaact 226  Q
    ||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  36169388 cacattttttagttgcgtgaccatatttttcagcttctaaatagtggtcacgcaact 36169444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 15221686 - 15221615
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaattta-atggttaattaactggaataatagtggtcacaca 174  Q
    |||||||||||| |||||| |||||||||||||||||  | ||||||||| ||||| || ||||||||||||    
T  15221686 ttttttaattgtgtgaccactattttttcagaatttatttagttaattaagtggaaaaagagtggtcacaca 15221615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 13312720 - 13312611
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| ||||||| || |||||| | |||||| ||| ||||| |||||| | ||| |  ||||||||||||| |||| ||||||||    
T  13312720 ttttttagttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaatagttgccacgcgcattttagttgcgtgaccacatttttca 13312621  T
Q  203 gcttctaaat 212  Q
    ||||||||||    
T  13312620 gcttctaaat 13312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 31189643 - 31189591
Alignment:
Q  160 aatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    ||||||||||||| | ||||||||||||| | || ||||||||||||||||||    
T  31189643 aatagtggtcacaaacattttagttgcgtgatcacatttttcagcttctaaat 31189591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 33958988 - 33959076
Alignment:
Q  125 attttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    |||||| ||||||||| | ||| || ||| ||||| ||||||||| || |  ||||||||||||| |||||||||||||| ||||||||    
T  33958988 atttttccagaatttatttggtcaactaagtggaaaaatagtggttactcggattttagttgcgtgaccatatttttcagtttctaaat 33959076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 42034839 - 42034771
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaa 210  Q
    ||||||| ||| ||||| ||||||||||||    ||||||||||||| |||| ||||||||||||||||    
T  42034839 tggttaactaagtggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 42034771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 19621480 - 19621550
Alignment:
Q  124 tattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcacca 193  Q
    ||||||| ||||||||| | |||||| ||| ||||| |||||||||||| || ||||||||||||| ||||    
T  19621480 tatttttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgacca 19621550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 43461687 - 43461797
Alignment:
Q  103 cttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttc 201  Q
    |||||| | |||| |||| | ||||||||||||||||| | |||| | ||| ||||| ||||||||| ||    ||||||||||||| ||| ||||||||    
T  43461687 ctttttcagttgtgtgacaactattttttcagaatttatttggtttactaagtggaaaaatagtggttacgtgaattttagttgcgtgaccgtatttttc 43461786  T
Q  202 agcttctaaat 212  Q
    | |||||||||    
T  43461787 aacttctaaat 43461797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 4169112 - 4169214
Alignment:
Q  124 tattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacg 221  Q
    ||||||||||||||||| | |||||| ||| ||||| |||||||||||| || ||||||||||||| |||| |||||||||||||||||| ||||| |||    
T  4169112 tattttttcagaatttatttggttaactaaatggaaaaatagtggtcacgcacattttagttgcgttaccacatttttcagcttctaaatagtggtcacg 4169211  T
Q  222 caa 224  Q
    |||    
T  4169212 caa 4169214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 42637945 - 42638067
Alignment:
Q  106 ttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagc 204  Q
    ||||| |||| |||||| ||||||||||||||||| | |||||| ||| | ||| ||||||||| || |  ||||||||||||| |||| ||||||||||    
T  42637945 ttttagttgtctgaccactattttttcagaatttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccacatttttcagc 42638044  T
Q  205 ttctaaat-gtggttacgcaact 226  Q
    |||||||| ||||| ||||||||    
T  42638045 ttctaaatagtggtcacgcaact 42638067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 1705657 - 1705781
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||| |||||| || |||| ||||| ||| | |||||| |||  |||| |||||||||||| |  ||||||||||| | |||||||||||||    
T  1705657 ttttttagttgtatgaccactagttttccagaaattatttggttaactaaggggaaaaatagtggtcacgcgcattttagttgcatgaccatatttttca 1705756  T
Q  203 gcttctaaat-gtggttacgcaact 226  Q
    |||||||||| ||||| ||||||||    
T  1705757 gcttctaaatagtggtcacgcaact 1705781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 31545738 - 31545614
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaatg-gttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||| |||||| ||||||| ||||||||| |  ||||| ||| | ||| |||||||||||  || |||||||||| || |||| ||||||||    
T  31545738 ttttttagttgtgtgaccactatttttccagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccacatttttca 31545639  T
Q  203 gcttctaaat-gtggttacgcaact 226  Q
    |||||||||| |||||||| |||||    
T  31545638 gcttctaaatagtggttactcaact 31545614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 27365015 - 27365086
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatg 213  Q
    ||||||||||| ||||| |||||||||||||| |||||||| ||||| || | ||||||||| |||||||||    
T  27365015 tggttaattaagtggaaaaatagtggtcacacgtattttagctgcgtgactacatttttcagtttctaaatg 27365086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 5341998 - 5341889
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||| | |||||||| ||||||||||||| | |||||| ||| ||||| ||||||||||| |  |||||||||||  | |||| ||||||||    
T  5341998 ttttttagttgtgtaaccattatgttttcagaatttatttggttaactaagtggaaaaatagtggtcatatgtattttagttgtatgaccacatttttca 5341899  T
Q  203 gcttctaaat 212  Q
     |||||||||    
T  5341898 acttctaaat 5341889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 42481409 - 42481300
Alignment:
Q  117 tgaccattattttttcagaattta-atggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gt 214  Q
    ||||||||||||||||||||||||  ||||||| ||| | ||| |||| |||||||  | |||||||||| || |||||||||||||| || ||||| ||    
T  42481409 tgaccattattttttcagaatttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccatatttttcagtttttaaatagt 42481310  T
Q  215 ggttacgcaa 224  Q
    ||| ||||||    
T  42481309 ggtcacgcaa 42481300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 26308629 - 26308736
Alignment:
Q  106 ttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagc 204  Q
    ||||| |||| |||||| || |||| ||||||||| | |||||| ||| ||||| |||||||||||| |  |||||| |||||| |||| ||| ||||||    
T  26308629 ttttagttgtgtgaccactaattttccagaatttatttggttaagtaagtggaaaaatagtggtcacgcgcattttaattgcgtgaccacattattcagc 26308728  T
Q  205 ttctaaat 212  Q
    ||||||||    
T  26308729 ttctaaat 26308736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 27335409 - 27335480
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatg 213  Q
    ||||||| ||| ||||| ||||||||||||   ||||||||||| || |||| |||||||||||||||||||    
T  27335409 tggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccacatttttcagcttctaaatg 27335480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 27326063 - 27326125
Alignment:
Q  151 aactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatg 213  Q
    |||||||| |||||||||||||  |||||||||||||| |||| |||||| || |||||||||    
T  27326063 aactggaaaaatagtggtcacatgtattttagttgcgtgaccacattttttagtttctaaatg 27326125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 27332300 - 27332362
Alignment:
Q  151 aactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatg 213  Q
    |||||||| |||||||||||||  |||||||||||||| |||| |||||| || |||||||||    
T  27332300 aactggaaaaatagtggtcacatgtattttagttgcgtgaccacattttttagtttctaaatg 27332362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 19280306 - 19280212
Alignment:
Q  117 tgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaa 211  Q
    |||||| || ||||||| |||||| | |||||| ||| ||||| |||||||||||| |  ||||||||||||| |||| |||||||| ||||||||    
T  19280306 tgaccactaatttttcaaaatttatttggttaactaagtggaa-aatagtggtcacgcgaattttagttgcgtgaccacatttttcaacttctaaa 19280212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 3823774 - 3823650
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatat--tttt 200  Q
    ||||||| |||  |||||| ||||||| || |||||| | |||||| ||| ||||| || |||||||||||  ||||||||||||| |||||||  ||||    
T  3823774 ttttttagttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacacgcattttagttgcgtgaccatattttttt 3823676  T
Q  201 cagcttctaaat-gtggttacgcaac 225  Q
    |||||| ||||| ||||| |||||||    
T  3823675 cagcttataaatagtggtcacgcaac 3823650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 11509952 - 11509916
Alignment:
Q  176 attttagttgcgtcaccatatttttcagcttctaaat 212  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  11509952 attttagttgcgtgaccacatttttcagcttctaaat 11509916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 13358101 - 13358193
Alignment:
Q  126 ttttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatgtggt 217  Q
    |||||||| |||||| | |||||| ||  ||||| ||||||||| || |  |||||| ||| || ||||||||||||||||||||||| ||||    
T  13358101 ttttttcaaaatttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccatatttttcagcttctaaatatggt 13358193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 5321949 - 5322058
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| |||||||| |||||||| | |||||| ||| ||||| |||||||||||| |  ||||||||||||| | |||||||||||    
T  5321949 ttttttagttgcgtgaccactatttttttagaatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgatcatatttttca 5322048  T
Q  203 gcttctaaat 212  Q
    ||||||||||    
T  5322049 gcttctaaat 5322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 38606828 - 38606939
Alignment:
Q  117 tgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gt 214  Q
    |||||| ||| ||| ||||||||| | |||||| ||| ||||| ||||||||||||||  ||||| ||||||| |||| |||||||||||||||||| ||    
T  38606828 tgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccacatttttcagcttctaaatagt 38606927  T
Q  215 ggttacgcaact 226  Q
    ||| ||||||||    
T  38606928 ggtaacgcaact 38606939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 32959638 - 32959572
Alignment:
Q  147 aattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatg 213  Q
    |||||| ||||| ||||||||||||||| |||||||||| || ||||||||||| ||||||| ||||    
T  32959638 aattaaatggaaaaatagtggtcacacacattttagttgtgtgaccatattttttagcttcttaatg 32959572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 15714695 - 15714791
Alignment:
Q  117 tgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    |||||| |||||||||  |||||| | |||||| ||| ||||| ||||||||||||  | ||||||||| ||| ||||||||||||||||| |||||    
T  15714695 tgaccactattttttcgaaatttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccatatttttcagcttttaaat 15714791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 29367081 - 29367151
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    ||||||| ||| ||||| |||||||||||| |  ||||||||||||| |||| ||||||||||||| ||||    
T  29367081 tggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttcaaaat 29367151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 26493338 - 26493432
Alignment:
Q  118 gaccattattttttcagaatttaatgg-ttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    |||||||| |||||||||||||| | | |||| ||| ||||| |||||| ||||| |  |||| |||||||| |||| ||||||||||||||||||    
T  26493338 gaccattaatttttcagaatttatttgattaactaaatggaaaaatagttgtcacgcgcattt-agttgcgtgaccacatttttcagcttctaaat 26493432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 1240891 - 1240996
Alignment:
Q  107 tttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagct 205  Q
    |||| |||| |||||| ||||||| || |||||| | |||||| ||| ||| | |||||||||||| || ||||||||| | | |||| |||||||||||    
T  1240891 tttagttgtgtgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcacgcacattttagtt-catgaccacatttttcagct 1240989  T
Q  206 tctaaat 212  Q
    |||||||    
T  1240990 tctaaat 1240996  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 33815025 - 33815127
Alignment:
Q  126 ttttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacgca 223  Q
    ||||||||||||||| | |||||| ||| ||||| ||| |||||||| |  ||||||||||||| |||| |||||||||||||||||| ||||| |||||    
T  33815025 ttttttcagaatttatttggttaactaagtggaaaaatggtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 33815124  T
Q  224 act 226  Q
    |||    
T  33815125 act 33815127  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 138715 - 138811
Alignment:
Q  117 tgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    |||||| ||||||||||||||||| | |||| | ||| ||||| |||||||||| | || | ||||||||||| |||| ||||||||||||||||||    
T  138715 tgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaat 138811  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 146736 - 146832
Alignment:
Q  117 tgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    |||||| ||||||||||||||||| | |||| | ||| ||||| |||||||||| | || | ||||||||||| |||| ||||||||||||||||||    
T  146736 tgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaat 146832  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 3620761 - 3620856
Alignment:
Q  118 gaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    ||||| ||||||||||||||||| | |||||| ||| || || ||||||||||||| |||||||||||| || | || |||||||| |||||||||    
T  3620761 gaccactattttttcagaatttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacatttttcaacttctaaat 3620856  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 10304688 - 10304796
Alignment:
Q  105 tttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcag 203  Q
    ||||||||||  |||||| | ||||| ||||||||| | |||||| ||| || || |||||||||||| |  ||||||||||||| ||| |||||||| |    
T  10304688 tttttaattgcgtgaccactttttttccagaatttatttggttaactaagtgaaaaaatagtggtcacgcgcattttagttgcgtgaccgtatttttctg 10304787  T
Q  204 cttctaaat 212  Q
    |||||||||    
T  10304788 cttctaaat 10304796  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 22608425 - 22608358
Alignment:
Q  160 aatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacgcaact 226  Q
    |||||||||||  || ||||||||||| | |||| |||||||||||||||||| ||||| ||||||||    
T  22608425 aatagtggtcatgcacattttagttgcatgaccacatttttcagcttctaaatagtggtcacgcaact 22608358  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 2835033 - 2834975
Alignment:
Q  154 tggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    ||||| |||| ||||||| | |||||||||||| | ||||||||||||||||| |||||    
T  2835033 tggaaaaataatggtcacgcgtattttagttgcatgaccatatttttcagcttttaaat 2834975  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 3222514 - 3222429
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacgcaact 226  Q
    ||||||| ||| ||||| ||||||||||||  | ||||||||||||| |||  |||||||||| | ||||| ||||| ||||||||    
T  3222514 tggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgcatttttcagcatttaaatagtggtcacgcaact 3222429  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 2430594 - 2430662
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaattta-atggttaattaactggaataatagtggtcac 171  Q
    ||||||| |||  |||||| |||||||||||||||||  ||||||| ||| ||||| ||||||||||||    
T  2430594 ttttttagttgcatgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcac 2430662  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 16583679 - 16583594
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacgcaact 226  Q
    ||||||||||| ||||| |||||||||||| |  ||||||||||| | | ||||||||||||||||||||| ||||| ||||||||    
T  16583679 tggttaattaagtggaaaaatagtggtcacgcgcattttagttgcatgatcatatttttcagcttctaaatagtggtcacgcaact 16583594  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 1966820 - 1966943
Alignment:
Q  104 ttttttaattgtttgaccattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttca 202  Q
    ||||||| |||  |||||| || |||| ||||||||| | |||||||||| ||||| |||||||||||| |  |||| |||||||| |||| ||||||||    
T  1966820 ttttttagttgcgtgaccactagttttccagaatttatttggttaattaagtggaaaaatagtggtcacgcgcattt-agttgcgtgaccacatttttca 1966918  T
Q  203 gcttctaaat-gtggttacgcaact 226  Q
    |||||||||| ||||| ||||||||    
T  1966919 gcttctaaatagtggtcacgcaact 1966943  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 24669267 - 24669196
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatg 213  Q
    ||||||| ||| || || ||||||||||||||  ||||||||||||| ||||||||||| || |||||||||    
T  24669267 tggttaactaagtgaaaaaatagtggtcacacgaattttagttgcgtgaccatatttttgagtttctaaatg 24669196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 9809157 - 9809072
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacgcaact 226  Q
    ||||||| ||| ||||| |||||||||||| |  |||| |||||||| || | |||||||||||||||||| ||||| ||||||||    
T  9809157 tggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactacatttttcagcttctaaatagtggtcacgcaact 9809072  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 35544448 - 35544515
Alignment:
Q  144 gttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat 212  Q
    ||||||||| ||||| ||||||| ||||||  |||| |||||||| |||| ||||||||||||||||||    
T  35544448 gttaattaagtggaaaaatagtgatcacacgcattt-agttgcgtgaccacatttttcagcttctaaat 35544515  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 17633385 - 17633452
Alignment:
Q  160 aatagtggtcacacatattttagttgcgtcaccatatttttc-agcttctaaatgtggttacgcaact 226  Q
    |||||||||||| |  ||||||||||||| |||||||||||| | |||||| ||||||| ||||||||    
T  17633385 aatagtggtcacgcgcattttagttgcgtgaccatatttttcaaacttctagatgtggtcacgcaact 17633452  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 9810843 - 9810758
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacgcaact 226  Q
    ||||||| ||| ||||| ||||| |||||| || |||| |||||||| || | |||||| ||||||||||| ||||| ||||||||    
T  9810843 tggttaactaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacattttttagcttctaaatagtggtcacgcaact 9810758  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 33249654 - 33249727
Alignment:
Q  154 tggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacgcaact 226  Q
    ||||| ||||||||||||||  ||||||  ||||| |||| |||||||| ||||||||| ||||| ||||||||    
T  33249654 tggaaaaatagtggtcacacgcattttatgtgcgtgaccacatttttcaccttctaaatagtggtcacgcaact 33249727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 19596831 - 19596795
Alignment:
Q  176 attttagttgcgtcaccatatttttcagcttctaaat 212  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  19596831 attttagttgcgtgaccacatttttcagcttctaaat 19596795  T

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Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 5940 - 5869
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatg 213  Q
    ||||||||||| || || |||||||||||| | ||||||||||||| ||||| | |||||||||| ||||||    
T  5940 tggttaattaagtgcaaaaatagtggtcacgcgtattttagttgcgacaccacacttttcagcttttaaatg 5869  T

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Target: scaffold1126 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 247 - 320
Alignment:
Q  154 tggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaat-gtggttacgcaact 226  Q
    ||||| |||||||||||  |  ||||||||||||| |||| |||||||||||||||||| ||||| ||||||||    
T  247 tggaaaaatagtggtcatgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaact 320  T

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Target: scaffold0043 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 87105 - 87034
Alignment:
Q  142 tggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatatttttcagcttctaaatg 213  Q
    ||||||| ||| | ||| ||||||||||||   |||||||||||||| |||| ||||||||| |||||||||    
T  87105 tggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacatttttcagtttctaaatg 87034  T

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Target: scaffold0251 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 10617 - 10699
Alignment:
Q  119 accattattttttcagaatttaat-ggttaattaactggaataatagtggtcacacatattttagttgcgtcaccatattttt 200  Q
    ||||||||||||| |||||||| | |||||| ||| ||||| |||| |||||||   |||||||||||||| |||| ||||||    
T  10617 accattattttttgagaatttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacattttt 10699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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