View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_69 (Length: 241)
Name: NF8241_low_69
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35972373 - 35972151
Alignment:
| Q |
1 |
tgttaattctagtagtaaactcttggatggacaagattcatcctgaataaataagataaaaatcaaaattcaacaaaactatttttaattcagatagagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35972373 |
tgttaattctagtagtaaactcttggatggacaagattcatcctgaataaataagataaaaatcaaaattcaacaaaactatttttaattcagatagagc |
35972274 |
T |
|
| Q |
101 |
actatcatacaagtaaagttgaataagtttgaccttcaaacacattgatatactattagagcctgtttggataaacaacttagttaagtgcttttcgaat |
200 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35972273 |
actatcatacatgtaaagttgaataagtttgaccttcaaacacattgatgtactattagaccctgtttggataaacaacttagttaagtgcttttcgaat |
35972174 |
T |
|
| Q |
201 |
agttgcttagcatataagtgctt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
35972173 |
agttgcttagcatataagtgctt |
35972151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 35952420 - 35952211
Alignment:
| Q |
1 |
tgttaattctagtagtaaactcttggatggacaagattcatcctgaataaataagataaaaatcaaaattcaac-aaaactatttttaattcagatagag |
99 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
35952420 |
tgttaattctagtagtaaactcttggaaggacaagattcatcctgaataaattggataaaaatcaaaattcaactaaaactatttttaattaagatagag |
35952321 |
T |
|
| Q |
100 |
cactatcatacaagtaaagttgaataagtttgaccttcaaacacattgatatactattagagcctgtttggataaacaacttagttaagtgcttttcgaa |
199 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||| | | |
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| T |
35952320 |
cacgatcatacaagtaaagttgaataagtttgaccttcaaacacattgatatactattagaccctgtttggataaacaagttaattaagcactttttgta |
35952221 |
T |
|
| Q |
200 |
tagttgctta |
209 |
Q |
| |
|
|||||||||| |
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|
| T |
35952220 |
tagttgctta |
35952211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35979523 - 35979474
Alignment:
| Q |
1 |
tgttaattctagtagtaaactcttggatggacaagattcatcctgaataa |
50 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||| ||||| |||||||| |
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|
| T |
35979523 |
tgttaattcttgaagtaaactcttggatgcacaagtttcattctgaataa |
35979474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 20982335 - 20982263
Alignment:
| Q |
153 |
ctattagagcctgtttggataaacaacttagttaagtgcttttcgaatagttgcttagcatataagtgcttat |
225 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| | | ||| |||||| ||||||||||||||| |
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|
| T |
20982335 |
ctattagaacctgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttat |
20982263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 33640987 - 33641048
Alignment:
| Q |
162 |
cctgtttggataaacaacttagttaagtgcttttcgaatagttgcttagcatataagtgctt |
223 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| | ||||| | ||||| ||||||||||||| |
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|
| T |
33640987 |
cctgtttggataaacagcttaattaagtgcttatagaataatcgcttatcatataagtgctt |
33641048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 193
Target Start/End: Complemental strand, 7480304 - 7480273
Alignment:
| Q |
162 |
cctgtttggataaacaacttagttaagtgctt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
7480304 |
cctgtttggataaacaacttagttaagtgctt |
7480273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 657881 - 657844
Alignment:
| Q |
156 |
ttagagcctgtttggataaacaacttagttaagtgctt |
193 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
657881 |
ttagaccctgtttggataaacaacttaattaagtgctt |
657844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 193
Target Start/End: Complemental strand, 16785459 - 16785430
Alignment:
| Q |
164 |
tgtttggataaacaacttagttaagtgctt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
16785459 |
tgtttggataaacaacttagttaagtgctt |
16785430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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