View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_7 (Length: 516)
Name: NF8241_low_7
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 269 - 511
Target Start/End: Original strand, 36494852 - 36495094
Alignment:
| Q |
269 |
cactaatcttattttctccatcgatttcaattcttcacctaaattagaattagggtttttcattttccccttttcccaaaaaccaataatttctcgcaca |
368 |
Q |
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| T |
36494852 |
cactaatcttattttctccatcgatttcaatttttcacctaaattagaattagggtttttcattttccccttttcccaaaaaccaagaatttctcgcaca |
36494951 |
T |
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| Q |
369 |
aatggttgaaaaatcggtactttcaataacaaacgaggattcttcttcttctagtggagttttaacaaagggattcaccgattgggttttcgagtgtcac |
468 |
Q |
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| T |
36494952 |
aatggttgaaaaatcggtactttcaataacaaacgaggattcttcttcttctagtggagttttaacaaagggattcaccgattgggttttcgagtgtcac |
36495051 |
T |
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| Q |
469 |
gggttttggcacaatgctgtgttgataatcgcttcttctctct |
511 |
Q |
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| T |
36495052 |
gggttttggcacaatgctgtgttgataatcgcttcttttctct |
36495094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 28204917 - 28204982
Alignment:
| Q |
138 |
ctattctactcaagggccttccattccattaagcacaaagcaacaaaaagtgtgctttggagtgtg |
203 |
Q |
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| T |
28204917 |
ctattctactcaagggccttccattccattaagcacaaagcaacaaaaagtgtgctttggagtgtg |
28204982 |
T |
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