View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8241_low_71 (Length: 240)

Name: NF8241_low_71
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8241_low_71
NF8241_low_71
[»] chr5 (19 HSPs)
chr5 (1-224)||(30676517-30676740)
chr5 (1-224)||(30337754-30337977)
chr5 (3-222)||(30484057-30484276)
chr5 (1-224)||(30436467-30436690)
chr5 (18-219)||(30400745-30400946)
chr5 (1-222)||(30712659-30712880)
chr5 (28-224)||(30061053-30061249)
chr5 (28-224)||(30750327-30750523)
chr5 (18-222)||(29853982-29854186)
chr5 (28-215)||(30241619-30241806)
chr5 (18-224)||(29872845-29873051)
chr5 (18-219)||(30207193-30207394)
chr5 (18-218)||(17417828-17418028)
chr5 (48-219)||(17983599-17983770)
chr5 (47-211)||(30520867-30521031)
chr5 (47-211)||(30561207-30561371)
chr5 (18-199)||(30476046-30476227)
chr5 (24-106)||(30330526-30330608)
chr5 (158-190)||(15347721-15347753)
[»] chr7 (1 HSPs)
chr7 (18-224)||(26708003-26708209)
[»] chr4 (2 HSPs)
chr4 (18-222)||(20295813-20296017)
chr4 (18-209)||(52352630-52352821)
[»] chr3 (1 HSPs)
chr3 (24-219)||(25293181-25293376)
[»] chr1 (3 HSPs)
chr1 (47-219)||(7100121-7100293)
chr1 (157-219)||(7580953-7581015)
chr1 (18-106)||(7581066-7581154)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30676740 - 30676517
Alignment:
Q  1 acaaactgtgactttcccatgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacaga 100  Q
    |||||| |||||||||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||    
T  30676740 acaaacggtgactttcccatgtccccatgattgatgcaacatcctcatcacgagtggacactaaaatggaactacctttagatccacacgacaaaacaga 30676641  T
Q  101 tttcaaacgattccatctatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaac 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30676640 tttcaaacgattccatctatcttgtgttaacccagattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaac 30676541  T
Q  201 aatccttgcacctttctttccatt 224  Q
    |||||||||||||||| |||||||    
T  30676540 aatccttgcacctttccttccatt 30676517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30337977 - 30337754
Alignment:
Q  1 acaaactgtgactttcccatgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacaga 100  Q
    |||||| |||||||||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||    
T  30337977 acaaacggtgactttcccatgtccccatgattgatgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacaga 30337878  T
Q  101 tttcaaacgattccatctatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaac 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  30337877 tttcaaacgattccatctatcttgtgttaacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaac 30337778  T
Q  201 aatccttgcacctttctttccatt 224  Q
    |||||||||||||||| |||||||    
T  30337777 aatccttgcacctttccttccatt 30337754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 30484057 - 30484276
Alignment:
Q  3 aaactgtgactttcccatgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatt 102  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||    
T  30484057 aaacggtgactttcccatgtccccatgattgttgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatt 30484156  T
Q  103 tcaaacgattccatctatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaa 202  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  30484157 tcaaacgattccatctatcttgtgttaacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttccgttgcaacaa 30484256  T
Q  203 tccttgcacctttctttcca 222  Q
    ||||||||||||||||||||    
T  30484257 tccttgcacctttctttcca 30484276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30436467 - 30436690
Alignment:
Q  1 acaaactgtgactttcccatgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacaga 100  Q
    |||||| |||| |||||||||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||    
T  30436467 acaaacggtgagtttcccatgttcccatgattgttgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacaga 30436566  T
Q  101 tttcaaacgattccatctatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaac 200  Q
    ||||||| ||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  30436567 tttcaaatgatcccatctatcttgtgttaacccaaattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaac 30436666  T
Q  201 aatccttgcacctttctttccatt 224  Q
    ||||||||||||||||||||||||    
T  30436667 aatccttgcacctttctttccatt 30436690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 30400745 - 30400946
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatc 117  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  30400745 catgttcccatgattgttgcaacaactttatcacgggtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaaacgattccatc 30400844  T
Q  118 tatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttct 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||    
T  30400845 tatcttgtgttaacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattctcccttgcaacaattcttgcacctttct 30400944  T
Q  218 tt 219  Q
    ||    
T  30400945 tt 30400946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30712880 - 30712659
Alignment:
Q  1 acaaactgtgactttcccatgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacaga 100  Q
    |||||| |||| |||||||||| |||||||| ||||||||||| |||||||||||||||| |||||||||||||||||| || ||||| |||||||||||    
T  30712880 acaaacggtgagtttcccatgttcccatgatagttgcaacaacctcatcacgggtggacaataaaatggaactaccttttgatccacacgacaaaacaga 30712781  T
Q  101 tttcaaacgattccatctatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaac 200  Q
    ||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  30712780 ttttaaacgatcccatctatcttgtgttaacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaac 30712681  T
Q  201 aatccttgcacctttctttcca 222  Q
    |||||||||| |||||||||||    
T  30712680 aatccttgcagctttctttcca 30712659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 30061053 - 30061249
Alignment:
Q  28 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatctatcttgtgt 127  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||    |||||| | ||| ||||    
T  30061053 tgatcgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggatccacaagacaacacaggtttcaatttgttccatttctctcgtgt 30061152  T
Q  128 taaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccatt 224  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30061153 taaccctgattccaattgttgattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctctctttccatt 30061249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 30750327 - 30750523
Alignment:
Q  28 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatctatcttgtgt 127  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||    |||||| | ||| ||||    
T  30750327 tgattgttgcaacaacttcatcacgggtggacaataaaatggaactacctttggatccacaagacaacacaggtttcaatttgttccatttctctcgtgt 30750426  T
Q  128 taaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttctttccatt 224  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30750427 taaccctgattccaattgttcattttgattccatacatcatccaaaaccaacaaatatcttttcccttgcaacaatccttgcacctttctttccatt 30750523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 29853982 - 29854186
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatc 117  Q
    ||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||||| || ||||| ||||| ||||| |||||| ||||||||     
T  29853982 catgttcccatgattgttgcaacaaatttatcacgagtggacactaaaatggaactaccttttgatccacacgacaacacagacttcaaatgattccatt 29854081  T
Q  118 tatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttct 217  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||    
T  29854082 tatcttgtgttaacccatattccaattgttgattttgattccacacatcatccaaaaccagcaaatatattttaccttgcaacaattcttgcacccttct 29854181  T
Q  218 ttcca 222  Q
    |||||    
T  29854182 ttcca 29854186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 30241806 - 30241619
Alignment:
Q  28 tgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatctatcttgtgt 127  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||    |||||| | ||| ||||    
T  30241806 tgattgttgcaacaacctcatcacgagtggatactaaaatggaactacctttggatccacatgacaacacagatttcaatgtgttccatttctctcgtgt 30241707  T
Q  128 taaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcaccttt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||| | |||||||||    
T  30241706 taaccctgattccaattgttcattttgattccacacatcatccaaaactagcaaatatattttaccttgtaacaattcctgcaccttt 30241619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 29872845 - 29873051
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatc 117  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||| |||||||      
T  29872845 catgttcccacgattgttgcaacaactttatcacgggtggacactaaaatggaactaccttttgatccacacgacaacacagacttcaaatgattccact 29872944  T
Q  118 tatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttct 217  Q
    |||| |||||||  || |||||||||||||   |||  ||||||| |||||||||||| ||||||||| |||| ||||||| || | |||||||||||||    
T  29872945 tatcatgtgttagtccagattccaattgttgggttttgttccacagatcatccaaaacgagcaaatattttttaccttgcagcacttcttgcacctttct 29873044  T
Q  218 ttccatt 224  Q
    |||||||    
T  29873045 ttccatt 29873051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 30207193 - 30207394
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatc 117  Q
    ||||| |||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| ||||| || || || |||||||    |||||||     
T  30207193 catgttcccatgatcgtcgcaacaacctcatcacgagtggacactaaaatggaactacctttggatccacacgataacactgatttcagtatattccatt 30207292  T
Q  118 tatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttct 217  Q
    | |||||  |||| ||  |||||||||| | |||||  ||||||||||||||||||| |||||||||| |||| ||||||| |||| | |||||||||||    
T  30207293 tctcttggcttaatccgaattccaattgctgatttttgttccacacatcatccaaaatcagcaaatatattttaccttgcagcaattcctgcacctttct 30207392  T
Q  218 tt 219  Q
    ||    
T  30207393 tt 30207394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 17418028 - 17417828
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatc 117  Q
    ||||| ||||||||||  |||||||| |||||||| ||||||||||||||||||||||||||||| |||||    || || ||||||||   |||||||     
T  17418028 catgttcccatgattgccgcaacaacctcatcacgagtggacactaaaatggaactacctttggatccacacataaacactgatttcaacgtattccatt 17417929  T
Q  118 tatcttgtgttaaccctgattccaattgtt-cattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttc 216  Q
    | |||||  |||| ||  || | ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||| |||| ||| | | ||| ||||||||    
T  17417928 tctcttggcttaatccgaatgctaattgttgcattttg-ttccacacatcgtccaaaaccagaaaatatcttttacctttcaatagttctttcacctttc 17417830  T
Q  217 tt 218  Q
    ||    
T  17417829 tt 17417828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 17983599 - 17983770
Alignment:
Q  48 tcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatctatcttgtgttaaccctgattccaattgtt 147  Q
    ||||| || ||||||||||||||| |||||||||| ||||||||||| ||||| ||||| | ||||||  | | |||  |||| ||  |||| |||| ||    
T  17983599 tcacgagtagacactaaaatggaagtacctttggatccacaagacaacacagacttcaacctattccacttcttttggtttaatccgaattcaaattctt 17983698  T
Q  148 cattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttcttt 219  Q
    || |||  ||||||||||| || ||||||| |||  ||||||| | |||||||| | |||||||||||||||    
T  17983699 cacttttgttccacacatcgtcgaaaaccaacaagcatcttttacgttgcaacatttcttgcacctttcttt 17983770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 30521031 - 30520867
Alignment:
Q  47 atcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatctatcttgtgttaaccctgattccaattgt 146  Q
    |||||| ||||| |||||||||||   ||||||||| |||   ||||| || ||||||||   ||||||| | |||||  |||| ||  |||||| || |    
T  30521031 atcacgagtggagactaaaatggatgaacctttggatccagttgacaacacggatttcaacttattccatttctcttggcttaatccaaattccagttct 30520932  T
Q  147 tcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcac 211  Q
    | ||||   |||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||    
T  30520931 tgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcac 30520867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 30561371 - 30561207
Alignment:
Q  47 atcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatctatcttgtgttaaccctgattccaattgt 146  Q
    |||||| ||||| |||||||||||   ||||||||| |||   ||||| || ||||||||   ||||||| | |||||  |||| ||  |||||| || |    
T  30561371 atcacgagtggagactaaaatggatgaacctttggatccagttgacaacacggatttcaacttattccatttctcttggcttaatccaaattccagttct 30561272  T
Q  147 tcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcac 211  Q
    | ||||   |||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||    
T  30561271 tgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcac 30561207  T

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Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 30476046 - 30476227
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatc 117  Q
    ||||| |||||||||  ||||||| | | |||||| ||||| ||||||||||||   |||||||| ||||| |||||  ||||||||||    ||||||     
T  30476046 catgttcccatgatttctgcaacatccttatcacgagtggaaactaaaatggaagatcctttggatccacatgacaacgcagatttcaacttgttccatt 30476145  T
Q  118 tatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaa 199  Q
    | |||||  |||| |||  |||||||  || ||||    |||| ||||||||||||||||||||| ||||||| ||||||||    
T  30476146 tgtcttggcttaatcctagttccaatccttgatttctgctccatacatcatccaaaaccagcaaaaatcttttaccttgcaa 30476227  T

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Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 30330608 - 30330526
Alignment:
Q  24 cccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaa 106  Q
    ||||||||||| |||||||| |||||| | |||||| | |||||| |||||||||||||  |||| ||||| ||| |||||||    
T  30330608 cccatgattgtcgcaacaacctcatcaggagtggacgcaaaaatgaaactacctttggatacacacgacaacacatatttcaa 30330526  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 15347721 - 15347753
Alignment:
Q  158 ccacacatcatccaaaaccagcaaatatctttt 190  Q
    ||||||||||||||| |||||||||||||||||    
T  15347721 ccacacatcatccaacaccagcaaatatctttt 15347753  T

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Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 26708003 - 26708209
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatc 117  Q
    ||||| |||||||||||||||||| | | |||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  26708003 catgttcccatgattgttgcaacatccttatcacgagtggacactaaaatggaactaccttttgatccacaggacaaaacagatttcaaacgattccatc 26708102  T
Q  118 tatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttct 217  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  26708103 tatcttgtgttaacccatattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttct 26708202  T
Q  218 ttccatt 224  Q
    |||||||    
T  26708203 ttccatt 26708209  T

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Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 20296017 - 20295813
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatc 117  Q
    ||||| |||||||||||||||||| | | |||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |||||     
T  20296017 catgttcccatgattgttgcaacatccttatcacgagttgacactaaaatggaactaccttttgatccacatgacaaaacagatttcaaacgagtccata 20295918  T
Q  118 tatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttct 217  Q
    ||||  |||||||||| ||||||||||| ||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||    
T  20295917 tatcgggtgttaacccagattccaattgatcattttgattccacacatcatctaaaatcaacaaatatattttcccttgcaacaatccttgcacctttct 20295818  T
Q  218 ttcca 222  Q
    |||||    
T  20295817 ttcca 20295813  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 52352630 - 52352821
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatc 117  Q
    ||||| ||||||||||| |||||| | | |||||  ||||| ||||||||| ||  ||||||||| ||||| ||||| |||||||||||    ||||||     
T  52352630 catgttcccatgattgtcgcaacatccttatcacaagtggaaactaaaatgtaagcacctttggatccacaggacaacacagatttcaacttgttccatt 52352729  T
Q  118 tatcttgtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgc 209  Q
    | |||||  |||| |||  ||  |||| |  ||||  ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  52352730 tttcttggcttaatcctagtttgaattctagatttctattccacacatcatccaaaaccaacaaatatcttttaccttgcaacaattcttgc 52352821  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 25293376 - 25293181
Alignment:
Q  24 cccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatctatctt 123  Q
    ||||| ||||| |||||||| |||||||| ||||||||||||||||||||||  ||||| |||   ||||| |||||||||||   |||| || | ||||    
T  25293376 cccattattgtcgcaacaacctcatcacgagtggacactaaaatggaactacgattggatccaaccgacaatacagatttcaacatattcaatttttctt 25293277  T
Q  124 gtgttaaccctgattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttcttt 219  Q
    | ||||| |   |||||||||| | |||||  ||||||||||| |||||||  ||||||||| |||| |||||||| | | ||| |||||||||||    
T  25293276 gggttaatctgaattccaattgctgatttttgttccacacatcgtccaaaataagcaaatatattttaccttgcaatagttcttacacctttcttt 25293181  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 7100121 - 7100293
Alignment:
Q  47 atcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaaacgattccatctatcttgtgttaaccctgattccaattgt 146  Q
    |||||| || |||||||||| |||| |||||||||| ||||| ||||| || ||||||||   ||||||| | |||||  |||  ||  |||| |||| |    
T  7100121 atcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattct 7100220  T
Q  147 tcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttcttt 219  Q
    |||||||  |||||||||||||||||||||| |||| ||||| | ||||||| || | ||||||| |||||||    
T  7100221 tcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttcttt 7100293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 7581015 - 7580953
Alignment:
Q  157 tccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttcttt 219  Q
    |||| ||||| |||||||||||||||  |||||| |||||||||| | |||||||||||||||    
T  7581015 tccaaacatcgtccaaaaccagcaaacgtctttttccttgcaacatttcttgcacctttcttt 7580953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 7581154 - 7581066
Alignment:
Q  18 catgtccccatgattgttgcaacaacttcatcacgggtggacactaaaatggaactacctttggaaccacaagacaaaacagatttcaa 106  Q
    ||||| |||||||||| ||||||  |   |||||| || |||||||||| |||| ||||||| || |||| |||||| |||||||||||    
T  7581154 catgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccaccagacaacacagatttcaa 7581066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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