View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_72 (Length: 239)
Name: NF8241_low_72
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 769911 - 769692
Alignment:
| Q |
16 |
gttttacccaaaaatagcttttttatataactttcaatttaacgactttggttacttgtggtaaagcaatgcgtgaacgcttacactcaatatggttgat |
115 |
Q |
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| T |
769911 |
gttttacccaaaaatagcttttttatataactttcaatttaacgactttggttacttgtggtaaagcaatgcgtgaacgcttacactcaatatggttgat |
769812 |
T |
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| Q |
116 |
ctgaattttgtcgatatagaagtaccataatgctatggttttctcatcatcacgatgtttcataaaaataacaaattttatttgattttatggtatatgt |
215 |
Q |
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| T |
769811 |
ctgaattttgtcgatatagaagtaccataatgctatggttttctcatcatcacgatgtttcataaaaataacaaattttatttgattttatggtatatgt |
769712 |
T |
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| Q |
216 |
attttcctcaaaacgacgac |
235 |
Q |
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| T |
769711 |
aatttcctcaaaacgacgac |
769692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 16360462 - 16360413
Alignment:
| Q |
179 |
aaaaataacaaattttatttgattttatggtatatgtattttcctcaaaa |
228 |
Q |
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| T |
16360462 |
aaaaataacaaaatttatttgattttctggtatgtgtaatttcctcaaaa |
16360413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 24456934 - 24456983
Alignment:
| Q |
179 |
aaaaataacaaattttatttgattttatggtatatgtattttcctcaaaa |
228 |
Q |
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|||||||||||| ||||||||||||| | |||| |||| ||||||||||| |
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| T |
24456934 |
aaaaataacaaaatttatttgattttttagtatgtgtaatttcctcaaaa |
24456983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 28326853 - 28326902
Alignment:
| Q |
179 |
aaaaataacaaattttatttgattttatggtatatgtattttcctcaaaa |
228 |
Q |
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|||||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
28326853 |
aaaaataacaaaatttatttgatttcttggtatatgtaaattcctcaaaa |
28326902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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