View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_75 (Length: 235)
Name: NF8241_low_75
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 46735762 - 46735539
Alignment:
| Q |
1 |
ttagtcacgtgagtgataatcataaaatataacacttccataatcagccatcgcattgaaccacataatatctagagtgaatttcaaagcagaattaata |
100 |
Q |
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| T |
46735762 |
ttagtcacgtgagtgataatcatagaatataacacttccataatcagccatcgcattgaaccacataatatctagagtgaatttcaaagcagaattaata |
46735663 |
T |
|
| Q |
101 |
cctcaggtgccatatacccaacggttccagtactgcccgtcatttcacttggatttaccgcttcaaccctagcaactccaaaatcagctattttcaaatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735662 |
cctctggtgccatatacccaacggttccagtactgcccgtcatttcacttggatttaccgcttcaaccctagcaactccaaaatcagctattttcaaatt |
46735563 |
T |
|
| Q |
201 |
tagattctcgtctagcaacatgtt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
46735562 |
tagattctcgtctagcaacatgtt |
46735539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 19409676 - 19409807
Alignment:
| Q |
1 |
ttagtcacgtgagtgataatcataaaatataacacttccataatcagccatcgcattgaaccacataatatctagagtgaatttcaaagcagaattaata |
100 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
19409676 |
ttagtcatgtgagtgatattcataaaatataacacttccataatcagccatcgcattgaaccacgtaatatctagagcgaatttcaaagcagaattaata |
19409775 |
T |
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| Q |
101 |
cctcaggtgccatatacccaacggttccagta |
132 |
Q |
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| T |
19409776 |
cctctggtgccatatacccaacagttccagta |
19409807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 985476 - 985369
Alignment:
| Q |
84 |
tcaaagcagaattaatacctcaggtgccatatacccaacggttccagtactgcccgtcatttcacttggatttaccgcttcaaccctagcaactccaaaa |
183 |
Q |
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||||||||| |||||||||||||| |||||||| |||| ||||||||| || ||||| ||||||||||| | |||||||||| ||||||||||||| |
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| T |
985476 |
tcaaagcagcattaatacctcaggagccatatatccaagggttccagtttcaccagtcatgtcacttggattcaaagcttcaacccgagcaactccaaaa |
985377 |
T |
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| Q |
184 |
tcagctat |
191 |
Q |
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|||||||| |
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| T |
985376 |
tcagctat |
985369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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