View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_79 (Length: 230)
Name: NF8241_low_79
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_79 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 161282 - 161505
Alignment:
| Q |
7 |
gttgatttgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgataaagaagttgcaatgcttgttaatggtctttgtaaacatgttgtggtga |
106 |
Q |
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| T |
161282 |
gttgatttgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgataaagaagttgcaatgcttgttaatggtctttgtaaacatgttgtggtga |
161381 |
T |
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| Q |
107 |
attcaacttgttactatgagattattaatgagcttaataagcattaccagaatatttggaaccgtaccatggctgcattatggttggtgtattttagaga |
206 |
Q |
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| T |
161382 |
attcaacttgttactatgagattattaatgagcttaataagcattatcagaatatttggaaccgtaccatggctgcattatggttggtgtattttagaga |
161481 |
T |
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| Q |
207 |
tgcttggagagctagttctacttt |
230 |
Q |
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| T |
161482 |
tgcttggagagctagttctacttt |
161505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 152805 - 153028
Alignment:
| Q |
7 |
gttgatttgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgataaagaagttgcaatgcttgttaatggtctttgtaaacatgttgtggtga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
152805 |
gttgatttgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgacaaagaagttgcaatgcttgttaatggtctttgcaaacatgttgttgtga |
152904 |
T |
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| Q |
107 |
attcaacttgttactatgagattattaatgagcttaataagcattaccagaatatttggaaccgtaccatggctgcattatggttggtgtattttagaga |
206 |
Q |
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| T |
152905 |
attcaacttgttactatgatactattaataagcttaataaccattatcagaatatttggaaccgtaccatgactacattatggttggtgtattttagaga |
153004 |
T |
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| Q |
207 |
tgcttggagagctagttctacttt |
230 |
Q |
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| T |
153005 |
tgcttggagagctagttctacttt |
153028 |
T |
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