View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_80 (Length: 229)
Name: NF8241_low_80
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_80 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 21263056 - 21262938
Alignment:
| Q |
111 |
tgcatatttgggcataaactacaaatgataggnnnnnnnggttaaattcctatatgtgcacacagtatatgttaaaaaattataacccatttgttatttc |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
21263056 |
tgcatatttgggcataaactacaaatgataggtttttttggttaaattcctatatgtgcacacagtatatgttaaaaaattgtaacccatctgttatttc |
21262957 |
T |
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| Q |
211 |
tatgcttaaagttgatttt |
229 |
Q |
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||||||||||||||||||| |
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| T |
21262956 |
tatgcttaaagttgatttt |
21262938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 21263499 - 21263417
Alignment:
| Q |
8 |
ttcattacttttctctgttagtcaaaatttgaaatctgttactgttatgnnnnnnnncttccccaaatcaataatgatggttc |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |
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| T |
21263499 |
ttcattacttttctctgttagtcaaaatttgaaatctgctattgttatgttttttttcttccccaaatcaataatgatggttc |
21263417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 11702 - 11593
Alignment:
| Q |
111 |
tgcatatttgggcataaactacaaatgataggnnnnnnnggttaaattcctatatgtgcacacagtatatgttaaaaaattataacccatttgttatttc |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
11702 |
tgcatatttgggcataaactacaaatgataggtttttttggttaaattcctatatgtgcacacagtatatgttaaaaaattgtaacccatatgttatttc |
11603 |
T |
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| Q |
211 |
tatgcttaaa |
220 |
Q |
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|||| ||||| |
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| T |
11602 |
tatgtttaaa |
11593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 42935069 - 42935178
Alignment:
| Q |
111 |
tgcatatttgggcataaactacaaatgataggnnnnnnnggttaaattcctatatgtgcacacagtatatgttaaaaaattataacccatttgttatttc |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
42935069 |
tgcatatttgggcataaactacaaatgataggtttttttggttaaattcctatatgtgcacacagtatatgttaaaaaattgtaacccatatgttatttc |
42935168 |
T |
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| Q |
211 |
tatgcttaaa |
220 |
Q |
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|||| ||||| |
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| T |
42935169 |
tatgtttaaa |
42935178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 4943818 - 4943864
Alignment:
| Q |
8 |
ttcattacttttctctgttagtcaaaatttgaaatctgttactgtta |
54 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4943818 |
ttcattacttttctctgttagtcaaaatttgaaatctgctactgtta |
4943864 |
T |
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